View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17217_low_14 (Length: 268)
Name: NF17217_low_14
Description: NF17217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17217_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 36691802 - 36692042
Alignment:
| Q |
17 |
acattgtccttactaaagtattgcgttgcatgatagaattttgtgaagttcatcttataagccaaccgtccaactttattgatctgttgatttcatccat |
116 |
Q |
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| T |
36691802 |
acattgtccttactaaagtattgcgttgcatgatagaattttgtgaagttcatcttataagccaaccgtccaactttattgatctgttgatttcatccat |
36691901 |
T |
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| Q |
117 |
accnnnnnnncataacagacaacaatattatgttattttatgagtatagatatccataaaaacatttgcatttgatcactgagattaatggattacctgt |
216 |
Q |
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| T |
36691902 |
accaaaaaaacataacagacaacaatattatgttattttatgagtatagatatccataaaaacatttgcatttgatcagtgagattaatggattacctgt |
36692001 |
T |
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| Q |
217 |
attcttttatctatcaactgcacaggtaacattttgttcat |
257 |
Q |
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| T |
36692002 |
attcttttatctatcaactgcacaggtaacattttgttcat |
36692042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 116
Target Start/End: Original strand, 23655507 - 23655582
Alignment:
| Q |
41 |
gttgcatgatagaattttgtgaagttcatcttataagccaaccgtccaactttattgatctgttgatttcatccat |
116 |
Q |
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| T |
23655507 |
gttgcatgacaaagttttgtgaagttcattctataagtcaatcgtccaactttactgatctggtgaagtcatccat |
23655582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 23803063 - 23802988
Alignment:
| Q |
41 |
gttgcatgatagaattttgtgaagttcatcttataagccaaccgtccaactttattgatctgttgatttcatccat |
116 |
Q |
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| T |
23803063 |
gttgcatgacaaagttttgtgaagttcattctataagtcaatcgtccaactttactgatctggtgaagtcatccat |
23802988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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