View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17217_low_16 (Length: 255)
Name: NF17217_low_16
Description: NF17217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17217_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 29546107 - 29546336
Alignment:
| Q |
11 |
cacagaaaagaaagactcaggtcccaaactccattgaatctcaaaatcatgatagatgccagtaggcatttcatt--aaacttcagatagtaaatggaaa |
108 |
Q |
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| T |
29546107 |
cacagaaaagaaagactcaggtcccaaactccattgaatctcaaaatcatgatagatgccagtaggcatttcattcaaaacttcagatagtaaatggaaa |
29546206 |
T |
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| Q |
109 |
cattcacaaaaaagccaaatccgataagnnnnnnnnngtcacatacaaataatacctattacctcatatccgagaacaacaaatatattagtcttttaag |
208 |
Q |
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| T |
29546207 |
tattcacaaaaaagccaaatccgataagaaaaaataagtcacatacaaataatacctaatacctcatatccgagaacaacaaatatattagtcttttaag |
29546306 |
T |
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| Q |
209 |
tctattgtaatttattaaaaacataacatt |
238 |
Q |
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|||| ||||||||||||||||||||||||| |
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| T |
29546307 |
tctactgtaatttattaaaaacataacatt |
29546336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 29925192 - 29925098
Alignment:
| Q |
14 |
agaaaagaaagactcaggtcccaaactccattgaatctcaaaatcatgatagatgccagtaggcatttcattaaacttcagatagtaaatggaaa |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29925192 |
agaaaagaaagactcaggtcccaaactccattgaatctcaaaatcatgatagatgccagtaggcatttcattaaacttcagatagtaaatggaaa |
29925098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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