View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17217_low_18 (Length: 250)
Name: NF17217_low_18
Description: NF17217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17217_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 12163777 - 12164014
Alignment:
| Q |
1 |
taagaattattgtttttgacataccattaaaccaatttttcgttcatatcatttttgtggcaattgaannnnnnnnnnnnnnnnnaccatgttaattttt |
100 |
Q |
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| T |
12163777 |
taagaattattatttttgacataccattaaaccaatttttcattcatatcatttttgtggcaattgaatttttgttttttttt--accatgttaattttt |
12163874 |
T |
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| Q |
101 |
cgtctctgtaacataataaagttaagatcannnnnnnnnnnnnngaaaagatataatttaaggtaatcaattagtatagtagatattgtttcaattcaaa |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12163875 |
cgtctctgtaacataataaagttaagatatttttttatttttttgaaaagatataatttaaggtaatcaattagtatagtagatattgtttcaattcaaa |
12163974 |
T |
|
| Q |
201 |
ataaaaattgtggagattttatttctttttattccctatg |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
12163975 |
ataaaaattgtggagattttatttctttttattccctatg |
12164014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 12408205 - 12408442
Alignment:
| Q |
1 |
taagaattattgtttttgacataccattaaaccaatttttcgttcatatcatttttgtggcaattgaannnnnnnnnnnnnnnnnaccatgttaattttt |
100 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12408205 |
taagaattattatttttgacataccattaaaccaatttttcattcatatcatttttgtggcaattgaatttttgttttttttt--accatgttaattttt |
12408302 |
T |
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| Q |
101 |
cgtctctgtaacataataaagttaagatcannnnnnnnnnnnnngaaaagatataatttaaggtaatcaattagtatagtagatattgtttcaattcaaa |
200 |
Q |
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| T |
12408303 |
cgtctctgtaacataataaagttaagatatttttttatttttttgaaaagatataatttaaggtaatcaattagtatagtagatattgtttcaattcaaa |
12408402 |
T |
|
| Q |
201 |
ataaaaattgtggagattttatttctttttattccctatg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
12408403 |
ataaaaattgtggagattttatttctttttattccctatg |
12408442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 30323061 - 30322818
Alignment:
| Q |
1 |
taagaattattgtttttgacataccattaaaccaattttt-cgttcatatcatttttgtggcaattgaannnnnnnnnnnnnnnnn---accatgttaat |
96 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
30323061 |
taagaattattatttttgacataccattaaaccaattttttcgttcatatcatttttgtggcaattgaattttttttgtttttttttttaccatgttaat |
30322962 |
T |
|
| Q |
97 |
ttttcgtctctgtaacataataaagttaagatcannnnnnnnnnnnnngaaaagatataatttaaggtaatcaattagtatagtagatattgtttcaatt |
196 |
Q |
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|||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30322961 |
tttttgtctctgtaacataatagagttaagatcattttttatttttttgaaaagatataatttaaggtaatcaattagtatggtagatattgtttcaatt |
30322862 |
T |
|
| Q |
197 |
caaaataaaaattgtggagattttatttctttttattccctatg |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30322861 |
caaaataaaaattgtggagattttatttctttttattccctatg |
30322818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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