View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17217_low_2 (Length: 629)
Name: NF17217_low_2
Description: NF17217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17217_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 14 - 322
Target Start/End: Complemental strand, 26336096 - 26335788
Alignment:
| Q |
14 |
cagagacataagcaatagaattggtgatatctgagagagtatagacannnnnnnggatgacttggttgaaggaatcaatttgggttgtcatatttggtca |
113 |
Q |
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| T |
26336096 |
cagagacataagcaatagaattggtgatatctgagagagtatagacatttttttggatgacttggttgaaggaatcaatttgggttgtcatatttggtca |
26335997 |
T |
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| Q |
114 |
tgaagaaaatgtatcaaatacacctgtaccaccatatgcaaagttcatcccatacttcaaatcatgttcaggcactatgttgttataccataatttgtga |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26335996 |
tgaagaaaatgtatcaaatacacctgtaccaccatatgcaaagttcatcccatacttcaaatcatgttcaggcactatgttgttataccataatttgtga |
26335897 |
T |
|
| Q |
214 |
atgattggtgatctcaatcccaaatactttgctgcacaacatataagaggaagcaccattaattccaaacctatcacttttcatattaaagctagaaaag |
313 |
Q |
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| T |
26335896 |
atgattggtgatctcaatcccaaatactttgctgcacaacatataagaggaagcaccattaattccaaacctatcatttttcatattaaagctagaaaag |
26335797 |
T |
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| Q |
314 |
tagagacac |
322 |
Q |
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||||||||| |
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| T |
26335796 |
tagagacac |
26335788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 376 - 612
Target Start/End: Complemental strand, 26335734 - 26335498
Alignment:
| Q |
376 |
tgcactttgtagtgttctaattgataatgatgctattagagggaagggtgaattcacataccaaggaagtcagttaaaactctgccgtcggagaatcttc |
475 |
Q |
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| T |
26335734 |
tgcactttgtagtgttccaattgataatgatgctattagagggaagggtgaattcacataccaaggaagtcagttaaaactatgccgtcggagaatcttc |
26335635 |
T |
|
| Q |
476 |
cggacagctttcggggaaaggttatgccatatggggctctccatgaaccggatataggttttatggtgttgccggtatcaacatacgagtctccgaaaac |
575 |
Q |
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| T |
26335634 |
cggacggctttcggggaaaggttatgccatatggggctctccatgaaccggatataggttttatggtgttgccggtatcaacatacgagtctccgaaaac |
26335535 |
T |
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| Q |
576 |
aaacaannnnnnngaaggatgattgagatggcgagtg |
612 |
Q |
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| T |
26335534 |
aaacaatttttttgaaggatgattgagatggcgagtg |
26335498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 14 - 268
Target Start/End: Complemental strand, 26328385 - 26328131
Alignment:
| Q |
14 |
cagagacataagcaatagaattggtgatatctgagagagtatagacannnnnnnggatgacttggttgaaggaatcaatttgggttgtcatatttggtca |
113 |
Q |
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||||||||||||| ||||| ||||||||||||||| |||| || ||| | |||| || | | ||||||| ||||| ||||||| |||||||| |
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| T |
26328385 |
cagagacataagctatagatttggtgatatctgagggagtgtatacattttcttgaatgagtttgattaaggaattgatttgtgttgtcacatttggtcc |
26328286 |
T |
|
| Q |
114 |
tgaagaaaatgtatcaaatacacctgtaccaccatatgcaaagttcatcccatacttcaaatcatgttcaggcactatgttgttataccataatttgtga |
213 |
Q |
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|| |||| || | ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| | || ||| |||||| |||||| |
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| T |
26328285 |
tgtagaagatatttcaaatacacctgtaccaccataggcaaagttcatcccatacttcaaatcatgcttaggcactgtattagtattccataaattgtga |
26328186 |
T |
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| Q |
214 |
atgattggtgatctcaatcccaaatactttgctgcacaacatataagaggaagca |
268 |
Q |
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| T |
26328185 |
gtgattggtgatttcaatcccaaatacttggctgcacaatataaaagaggaagca |
26328131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 26323077 - 26322849
Alignment:
| Q |
16 |
gagacataagcaatagaattggtgatatctgagagagtatagacannnnnnnggatgacttggttgaaggaatcaatttgggttgtcatatttggtcatg |
115 |
Q |
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|||||||||||||||| ||| ||| |||||| ||||||||||| | |||| ||||||||||||||| ||||||| |||||||||||||| || |
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| T |
26323077 |
gagacataagcaatagctttgctgagatctgaaggagtatagacattttcttgaatgagttggttgaaggaatcgatttgggctgtcatatttggtcctg |
26322978 |
T |
|
| Q |
116 |
aagaaaatgtatcaaatacacctgtaccaccatatgcaaagttcatcccatacttcaaatcatgttcaggcactatgttgttataccataatttgtgaat |
215 |
Q |
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||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| || ||| ||||| || ||||||||| |
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| T |
26322977 |
aagtaaatgtatcaaatacacctgtgccaccatatgcaaagttcatcccatacttcaaataatgtttagacacaatgtt------cctgaatttgtgagg |
26322884 |
T |
|
| Q |
216 |
gattggtgatctcaatcccaaatactttgctgcac |
250 |
Q |
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| T |
26322883 |
gattggtgatctcaatctcaaatacttggctgcac |
26322849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 411 - 612
Target Start/End: Complemental strand, 26327747 - 26327546
Alignment:
| Q |
411 |
ttagagggaagggtgaattcacataccaaggaagtcagttaaaactctgccgtcggagaatcttccggacagctttcggggaaaggttatgccatatggg |
510 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || | |||| |||||||||||| ||||| || |
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| T |
26327747 |
ttagagggaagggtgaattcacataccaaggaagtcggttaaaactctaccgtcggagaatctcccaactggttttccgggaaaggttataccataaggt |
26327648 |
T |
|
| Q |
511 |
gctctccatgaaccggatataggttttatggtgttgccggtatcaacatacgagtctccgaaaacaaacaannnnnnngaaggatgattgagatggcgag |
610 |
Q |
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|| |||||||| | |||| | |||||||| ||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| |
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| T |
26327647 |
actttccatgaatcaaatatggtttttatggagttgccggtatcaacatacgaatctccaaaaacaaacaatttttttgaaggatgattgagatggcgag |
26327548 |
T |
|
| Q |
611 |
tg |
612 |
Q |
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|| |
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| T |
26327547 |
tg |
26327546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 434 - 581
Target Start/End: Complemental strand, 26321184 - 26321037
Alignment:
| Q |
434 |
taccaaggaagtcagttaaaactctgccgtcggagaatcttccggacagctttcggggaaaggttatgccatatggggctctccatgaaccggatatagg |
533 |
Q |
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|||||| |||||||||||||||||| ||||| ||||||||||| | | |||| |||||||||||||||||| || || |||||||||| | | || |
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| T |
26321184 |
taccaatgaagtcagttaaaactctaccgtccgagaatcttcctgcaggttttccgggaaaggttatgccataaggttctttccatgaaccaggtttact |
26321085 |
T |
|
| Q |
534 |
ttttatggtgttgccggtatcaacatacgagtctccgaaaacaaacaa |
581 |
Q |
| |
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|||| | |||||||||||||||||||||||||||||||||| ||||| |
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| T |
26321084 |
tttttggctgttgccggtatcaacatacgagtctccgaaaacgaacaa |
26321037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 42224133 - 42224184
Alignment:
| Q |
124 |
gtatcaaatacacctgtaccaccatatgcaaagttcatcccatacttcaaat |
175 |
Q |
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|||||||| ||||| ||||||||| ||||||||||||| ||||| ||||||| |
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| T |
42224133 |
gtatcaaacacaccagtaccaccaaatgcaaagttcattccatatttcaaat |
42224184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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