View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17217_low_20 (Length: 233)
Name: NF17217_low_20
Description: NF17217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17217_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 2198258 - 2198473
Alignment:
| Q |
5 |
atcgttgttgagacatggcgcagaaaagattcatcattgaggttgaaaaagcgaaggcagcaacggaggataaaccttcaagaggacctgcttatcgtag |
104 |
Q |
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| T |
2198258 |
atcgttattgagccatggcgcaggaaagattcatcattgaggttgaaaaagcgaaggcagcaacggaggataaaccttcaagaggacctgcgtatcgcag |
2198357 |
T |
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| Q |
105 |
catcttcgctaaagatggttttcctcctcctattcctggtcttgatagttgctgggatgtttttcggttagtttcgatgcaaatcaatgttcatttcaat |
204 |
Q |
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| T |
2198358 |
tatcttcgctaaggatggatttcctcctcctattcctggtcttgatagttgctgggatgtttttcggttagtttcgatgcaaatcaatgttcatttcaat |
2198457 |
T |
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| Q |
205 |
tttccatgtcgatttc |
220 |
Q |
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|||||||||||||||| |
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| T |
2198458 |
tttccatgtcgatttc |
2198473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 2210469 - 2210646
Alignment:
| Q |
1 |
cgcgatcgttgttgagacatggcgcagaaaagattcatcattgaggttgaaaaagcgaaggcagcaacggaggataaaccttcaagaggacctgcttatc |
100 |
Q |
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||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||| |
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| T |
2210469 |
cgcgatcatcgttgagccatggcgcagaaaagattcatcattgaggttgaaaaagcgaaggaagcaacggaagataaaccttcaagaggacctgcgtatc |
2210568 |
T |
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| Q |
101 |
gtagcatcttcgctaaagatggttttcctcctcctattcctggtcttgatagttgctgggatgtttttcggttagttt |
178 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2210569 |
gtagcatcttcgctaaagatggttttcctcctcctattcttggtcttgatagttgctgggatgtttttcggttagttt |
2210646 |
T |
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