View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17217_low_21 (Length: 227)
Name: NF17217_low_21
Description: NF17217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17217_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 29545807 - 29545887
Alignment:
| Q |
1 |
gaagttcctcctatatagtaaaccggctcccacccaccccaacataaatactaaggtatacaaacatttgttattcgggaa |
81 |
Q |
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| T |
29545807 |
gaagttcctcctatatagtaaaccggctcccacccaccccaacataaatactaaggtatacaaacatttgttattcgggaa |
29545887 |
T |
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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 29545987 - 29546032
Alignment:
| Q |
182 |
atgcttcaaagacaaaatacattccttgatcattcatgcaagacat |
227 |
Q |
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| T |
29545987 |
atgcttcaaagacaatatacattccttgatcattcatgcaagacat |
29546032 |
T |
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