View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17217_low_24 (Length: 208)
Name: NF17217_low_24
Description: NF17217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17217_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 54984359 - 54984184
Alignment:
| Q |
19 |
cttccgtagggagaaatctttggatacaaaatagcataatctttcacagttttgtataatactggccttgactcattcactagtttgtcaattggtttga |
118 |
Q |
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| T |
54984359 |
cttccgtaaggagaaatctttggatacaaaatagcataatctttcacagttttgtataatactggccttgactcattcactagtttgtcaattggtttga |
54984260 |
T |
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| Q |
119 |
cctctttctctgaatttgggcgacatgtcataactactgtgagcctttccttttctgaatctaccactgctctgtg |
194 |
Q |
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| T |
54984259 |
cctctttctctgaatttgggcgacatgtcataactactgtgagcctttccttttctgaatctaccactgctctgtg |
54984184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 50 - 194
Target Start/End: Original strand, 31320337 - 31320481
Alignment:
| Q |
50 |
tagcataatctttcacagttttgtataatactggccttgactcattcactagtttgtcaattggtttgacctctttctctgaatttgggcgacatgtcat |
149 |
Q |
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| T |
31320337 |
tagcataatcttttactggtttgtataatactggccttgactcgttcactagtttgtcaatcggttgaatctctttctctgaatttgggcggcaaaacat |
31320436 |
T |
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| Q |
150 |
aactactgtgagcctttccttttctgaatctaccactgctctgtg |
194 |
Q |
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| T |
31320437 |
agcaactgagagcctttccctttctgcatttaccactactctgtg |
31320481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 54 - 194
Target Start/End: Original strand, 31326377 - 31326517
Alignment:
| Q |
54 |
ataatctttcacagttttgtataatactggccttgactcattcactagtttgtcaattggtttgacctctttctctgaatttgggcgacatgtcataact |
153 |
Q |
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| T |
31326377 |
ataatcttttactggtctgtatgataatggccttgactcgttcactagtttgtcaatcggttgaatctctttctccgaatctgggcggcataacatagct |
31326476 |
T |
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| Q |
154 |
actgtgagcctttccttttctgaatctaccactgctctgtg |
194 |
Q |
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| T |
31326477 |
actgagagccttgccttttcttcatttaccactgctctgtg |
31326517 |
T |
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