View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17217_low_4 (Length: 469)
Name: NF17217_low_4
Description: NF17217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17217_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 17 - 459
Target Start/End: Complemental strand, 23930970 - 23930528
Alignment:
| Q |
17 |
agatccatataaatcagcattaagattaatagctgaaatatctgttgtatataaagtataagggtcacttggatataacttaataccatgtggttgtgta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
23930970 |
agatccatataaatcagcattaagattaatagctgaaatatctgttgtatataaagtataagggtcacttggatataatttaatcccatgtggttgtgta |
23930871 |
T |
|
| Q |
117 |
ttctctcccaaaccatataaagaagcatctttaggtaattttgttgaaatctcaagatattggtctttgaaaacaagtgaactaaatgggtctgaagaag |
216 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23930870 |
ttctctcccaaaccatataaagatgcatctttaggtaattttgttgaaatctcaagatattggtctttgaaaacaagtgaactaaatgggtctgaagaag |
23930771 |
T |
|
| Q |
217 |
ttgaagttgagttgaaaagggtttcaccatttgattttcttttgactgagaaactaaagggatttgaaatgtagctgaatagaagctctgagcctgaata |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23930770 |
ttgaagttgagttgaaaagggtttcaccatttgattttcttttgactgagaaactaaagggatttgaaatgtagctgaatagaagctctgagcctgaata |
23930671 |
T |
|
| Q |
317 |
ctctgagacttcaatagggnnnnnnnggaactttcctaaggtttgtggtaatggtggtggttgttctcttgggataaggttgtatggtacttcccatctt |
416 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23930670 |
ctctgagacttcaatagggtttttttggaactttcctaaggtttgtggtaatggtggtggttgttctcttgggataaggttgtatggtacttcccatctt |
23930571 |
T |
|
| Q |
417 |
tgcttgtttgcatctgttatgtgtactcttaaacggttctctg |
459 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23930570 |
tgcttgtttgcatctgttatgtgtactcttaaacggttctctg |
23930528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 50121815 - 50121984
Alignment:
| Q |
18 |
gatccatataaatcagcattaagattaatagctgaaatatctgttgtatataaagtataagggtcacttggatataacttaataccatgtggttgtgtat |
117 |
Q |
| |
|
|||||||||||||||| ||| || ||||||||||| ||||| |||||||| ||||| ||||| ||| |||||| |||||| || |||| ||||||||| | |
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| T |
50121815 |
gatccatataaatcagaattgaggttaatagctgatatatcagttgtatacaaagtgtaaggatcatttggatgtaacttcattccatttggttgtgtgt |
50121914 |
T |
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| Q |
118 |
tctctcccaaaccatataaagaagcatctttaggtaattttgttgaaatctcaagatattggtctttgaa |
187 |
Q |
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||||||| |||||||| |||||||||| ||| || ||||| || ||||| || | |||||||||||||| |
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| T |
50121915 |
tctctcctaaaccatacaaagaagcatttttgggcaatttggtagaaatttctaagtattggtctttgaa |
50121984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 50112240 - 50112430
Alignment:
| Q |
21 |
ccatataaatcagcattaagattaatagctgaaatatctgttgtatataaagtataagggtcacttggatataacttaataccatgtggttgtgtattct |
120 |
Q |
| |
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||||||| ||||| || |||||||| |||| | ||| || ||||| ||||||||||| ||| | ||||| ||||| || |||||||| |||| |||| |
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| T |
50112240 |
ccatatagatcagtgttgagattaatggctgctacatcagtggtatacaaagtataaggatcattaggatacaactttatcccatgtggctgtgagttct |
50112339 |
T |
|
| Q |
121 |
ctcccaaaccatataaagaagcatctttaggtaattttgttgaaatctcaagatattggtctttgaaaacaagtgaactaaatgggtctga |
211 |
Q |
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||||||||||||| | |||||||||||| || | ||| || ||||| || | |||||||||||||| || | || || |||||||||||| |
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| T |
50112340 |
ctcccaaaccatacagagaagcatctttgggaagtttagtagaaatttccaagtattggtctttgaagaccaatggaccaaatgggtctga |
50112430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 451
Target Start/End: Original strand, 50122169 - 50122251
Alignment:
| Q |
369 |
ggtggtggttgttctcttgggataaggttgtatggtacttcccatctttgcttgtttgcatctgttatgtgtactcttaaacg |
451 |
Q |
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||||||||||| || ||||| | ||| ||||| || || ||||| |||||||| |||||||| ||||||||||| || ||||| |
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| T |
50122169 |
ggtggtggttgctcccttggcaaaagattgtagggaacctcccacctttgcttctttgcatcagttatgtgtaccctcaaacg |
50122251 |
T |
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