View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17217_low_5 (Length: 445)
Name: NF17217_low_5
Description: NF17217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17217_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 29488866 - 29488441
Alignment:
| Q |
1 |
aggattaactattattgttgtgttaaatattataatggtgattgattagatggaagaagttgtatatgatttgtttggttagtatatccattagactttg |
100 |
Q |
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| T |
29488866 |
aggattaactattattgttgtgttaaatattataatggtgattgattagatggaagaagttgtatatgatttgtttgtttagtatatccattagactttg |
29488767 |
T |
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| Q |
101 |
tgaccataatgcatatatatagtgattattaatgtttatagttttaaaatatttgatgtggttttagaaaacaaagttaaagttgtaacatatggcatgg |
200 |
Q |
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| T |
29488766 |
tgaccataatgcatatatatagtgattattaatgattatagtttttaaatatttgatgtggttttagaaaacaaagttaaagttgtaacatatggcatgg |
29488667 |
T |
|
| Q |
201 |
tattggttgtaacttttggccaagtgtaagtcctcaatcgacaaaagtgattcaaatgttttatatttactttttgtaatttttatagttaaagttgagg |
300 |
Q |
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| T |
29488666 |
tattggttgtaacttttggccaagtgtaagtcctcaatcgacaaaagtgattcaagtgttttatatttactttttgtaatttttgtagttaaagttgagg |
29488567 |
T |
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| Q |
301 |
tttgattgtaaatgaagttctcattggaataatcattcctataaatttgacaaaactagagtttatccaaatatgaaccaaaatgaatgtttggcttgat |
400 |
Q |
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| T |
29488566 |
tttgattgtaaatgaagttgtcattggaataatcattgctataaatttgacaaaactagagtttatccaaatatgaaccaaaatgaatgattggcttgct |
29488467 |
T |
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| Q |
401 |
ttatgctactctctccctcaacaacttg |
428 |
Q |
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| T |
29488466 |
ttatgctac--tctccctcaacaacttg |
29488441 |
T |
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