View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17217_low_6 (Length: 425)
Name: NF17217_low_6
Description: NF17217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17217_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 139 - 412
Target Start/End: Complemental strand, 26415226 - 26414953
Alignment:
| Q |
139 |
caatttgatacgcatctagcttctttcgaaaacatttacccgccaacaatttgaatcaaatgcaggattttataaataatttctaggcaaggagttttca |
238 |
Q |
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| T |
26415226 |
caatttgatatgcatctagcttctttcgaaaacatttaccagccaacaatttgaatcaaatgcaggattttataaataatttctaggcaaggagttttca |
26415127 |
T |
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| Q |
239 |
aatcaaaccatacactttgtaaaatttaaaatagtgtatgaatattcatttctaatggcaataccatccacaatagtacaatttcaaaagtagaaaatgt |
338 |
Q |
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| T |
26415126 |
aatcaaaccatacactttgtaaaatttaaaatagtctatgaatattcatttctaatggcaataccatccacaatagtacaatttcaaaagtagaaaatgt |
26415027 |
T |
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| Q |
339 |
aaacacataaaacagtgcctgagtattcattttctcatggcaatataatttacaatggtataatttcaaaagta |
412 |
Q |
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| T |
26415026 |
aaacacataaaacagtgcctgagtattcattttctcatggcaatataatttacaatggtacaatttcaaaagta |
26414953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 26415294 - 26415220
Alignment:
| Q |
17 |
agcttatactataaaatcacttaagatagaatgaaattaagtagggtaaaacgtagggagtttaacgtcaatttg |
91 |
Q |
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| T |
26415294 |
agcttatactataaaatcacttaagatagaatgaaattaagtagggtaaaacgtagggagtttaacgtcaatttg |
26415220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 347
Target Start/End: Complemental strand, 26414996 - 26414936
Alignment:
| Q |
287 |
tttctaatggcaataccatccacaatagtacaatttcaaaagtagaaaatgtaaacacata |
347 |
Q |
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| T |
26414996 |
tttctcatggcaatataatttacaatggtacaatttcaaaagtagaatatgtacacacata |
26414936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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