View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17218_high_28 (Length: 208)
Name: NF17218_high_28
Description: NF17218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17218_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 12 - 191
Target Start/End: Complemental strand, 25093039 - 25092860
Alignment:
| Q |
12 |
gaaaatcatcagtaaaaactcctttaatcttgaagaaatgtgcttgaagaagcgcgattttcggcatcacaaatgtaacattgttgatatcagctacgac |
111 |
Q |
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| T |
25093039 |
gaaaatcatcagtaaaaactcctttaatcttgaagaaatgtgcttgaagaagcgcgattttcggcatcacaaatgtaacattgttgatatcagccacgac |
25092940 |
T |
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| Q |
112 |
gcgactattgttcacacaagtagcacaaggattgacaccaagagaaacagtgaaaagcaagttatgatcaatctttaaag |
191 |
Q |
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| T |
25092939 |
gcgactattgttcacacaagtagcacaaggattgacaccaagagaaacagtgaaaagcaagttatgatcaatctttaaag |
25092860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 29554410 - 29554329
Alignment:
| Q |
12 |
gaaaatcatcagtaaaaactcctttaatcttgaagaaatgtgcttgaagaagcgcgattttcggcatcacaaatgtaacatt |
93 |
Q |
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|||||||||||||||||| ||| |||| || || ||||||||||||||||| | ||||| ||||| |||||||| ||||| |
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| T |
29554410 |
gaaaatcatcagtaaaaattccactaatgttaaaaaaatgtgcttgaagaagtgaaattttaggcatgacaaatgttacatt |
29554329 |
T |
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