View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17218_high_4 (Length: 542)
Name: NF17218_high_4
Description: NF17218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17218_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 8 - 300
Target Start/End: Original strand, 35383961 - 35384253
Alignment:
| Q |
8 |
tagcaaaggcctttaagtttaatgaccatgatgattcttgatctatagggctcaaatttaattcaaatagttcaatttatttgttcactttgcaaaatgt |
107 |
Q |
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| T |
35383961 |
tagcaaaggcctttaagtttaatgaccatgatgattcttgatctatagggctcaaatttaattcaaatagctcaatttatttgttccctttgcaaaatgt |
35384060 |
T |
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| Q |
108 |
actatgtttcataaacgttgcaataccattagcttatacaagattttatttaattcaatttattctctgttatatttgnnnnnnnattggtggtaagtac |
207 |
Q |
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| T |
35384061 |
actatgtttcataaacgttgcaataccattagcttatacaagattttatttaattcaatttattctctgttatatttgtttttttattggtggtaagtac |
35384160 |
T |
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| Q |
208 |
tatttttatttggtactttaagttgtgtaattgcagatacacccttcacattttaacatgcacttcttctcacgaatagccatgccaaataac |
300 |
Q |
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| T |
35384161 |
tatttttatttggtacgttaaattgtgtaattgcatatacaccctttacattttaacatgcacttcttctcatgaatagccatgacaaataac |
35384253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 63 - 385
Target Start/End: Original strand, 35387865 - 35388185
Alignment:
| Q |
63 |
atttaattcaaatagttcaatttatttgttcactttgcaaaatgtactatgtttcataaacgttgcaataccattagcttatacaagattttatttaatt |
162 |
Q |
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| T |
35387865 |
atttaattcaaatagctcaatttatttgtcccctttgcaaaatgtactatgtttcagaaatgttgcaatacctttagcttatacaagattttatttaatt |
35387964 |
T |
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| Q |
163 |
caatttattctctgttatatttgnnnnnnnattggtggtaagtactatttttatttggtactttaagttgtgtaattgcagatacacccttcacatttta |
262 |
Q |
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| T |
35387965 |
caatttattccctgttatattt---tttttattggtggtaagtactatttttatttggtactttaagttgtgtaattgctgatacacccttcacatttga |
35388061 |
T |
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| Q |
263 |
acatgcacttcttctcacgaatagccatgc-caaataaccataatttttattttataatgcggatgattaacatacataaccaaaatgtatacattgtca |
361 |
Q |
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| T |
35388062 |
acatgcatttcttctcacgactaaccatacaaaaataattataatttttattttataatgccgatgattaacatacataaccaaaatgtatacatattcg |
35388161 |
T |
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| Q |
362 |
tagaaagtgaaaatcaataactca |
385 |
Q |
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| T |
35388162 |
gagaaagtgaaaatcaataactca |
35388185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 465
Target Start/End: Original strand, 35388201 - 35388237
Alignment:
| Q |
429 |
cttcgatctttcattcatgttggaagacttgttcatt |
465 |
Q |
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| T |
35388201 |
cttcgatctttcattcatgttggaagatttgttcatt |
35388237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 526
Target Start/End: Original strand, 35388244 - 35388277
Alignment:
| Q |
493 |
tatgtatatgctactccaacaatactgattaaac |
526 |
Q |
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| T |
35388244 |
tatgtatatgctcctccaacaatactgattaaac |
35388277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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