View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17218_high_5 (Length: 470)

Name: NF17218_high_5
Description: NF17218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17218_high_5
NF17218_high_5
[»] chr4 (5 HSPs)
chr4 (398-454)||(5385693-5385749)
chr4 (405-454)||(48035364-48035413)
chr4 (398-454)||(31518320-31518376)
chr4 (424-454)||(54801640-54801670)
chr4 (405-441)||(7138718-7138754)
[»] chr8 (5 HSPs)
chr8 (398-454)||(26724790-26724846)
chr8 (398-454)||(30203344-30203400)
chr8 (405-454)||(9899740-9899789)
chr8 (405-441)||(37810112-37810148)
chr8 (398-454)||(41313134-41313190)
[»] chr3 (2 HSPs)
chr3 (398-454)||(34721096-34721152)
chr3 (398-454)||(31543573-31543629)
[»] chr1 (3 HSPs)
chr1 (404-453)||(1049089-1049138)
chr1 (405-454)||(29675325-29675374)
chr1 (425-454)||(46599015-46599044)
[»] chr5 (3 HSPs)
chr5 (405-454)||(4921574-4921623)
chr5 (405-454)||(20654627-20654676)
chr5 (405-454)||(41697267-41697316)


Alignment Details
Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 398 - 454
Target Start/End: Complemental strand, 5385749 - 5385693
Alignment:
Q  398 tccttgcacaatctttcctttctccttctttcctttcactttcattcaccaaccaaa 454  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5385749 tccttacacaatctttcctttctctttctttcctttcactttcattcaccaaccaaa 5385693  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 48035413 - 48035364
Alignment:
Q  405 acaatctttcctttctccttctttcctttcactttcattcaccaaccaaa 454  Q
    ||||||||||| ||||| ||||||||||||||||||||||  ||||||||    
T  48035413 acaatctttccattctctttctttcctttcactttcattcttcaaccaaa 48035364  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 454
Target Start/End: Complemental strand, 31518376 - 31518320
Alignment:
Q  398 tccttgcacaatctttcctttctccttctttcctttcactttcattcaccaaccaaa 454  Q
    ||||| ||||||||||||| ||||  ||||||||||||||||||||| | |||||||    
T  31518376 tccttacacaatctttcctatctctatctttcctttcactttcattcccaaaccaaa 31518320  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 454
Target Start/End: Complemental strand, 54801670 - 54801640
Alignment:
Q  424 tctttcctttcactttcattcaccaaccaaa 454  Q
    |||||||||||||||||||||||||||||||    
T  54801670 tctttcctttcactttcattcaccaaccaaa 54801640  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 405 - 441
Target Start/End: Complemental strand, 7138754 - 7138718
Alignment:
Q  405 acaatctttcctttctccttctttcctttcactttca 441  Q
    |||||||||| |||||| |||||||||||||||||||    
T  7138754 acaatctttcttttctctttctttcctttcactttca 7138718  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 398 - 454
Target Start/End: Original strand, 26724790 - 26724846
Alignment:
Q  398 tccttgcacaatctttcctttctccttctttcctttcactttcattcaccaaccaaa 454  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  26724790 tccttacacaatctttcctttctctttctttcctttaactttcattcaccaaccaaa 26724846  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 398 - 454
Target Start/End: Original strand, 30203344 - 30203400
Alignment:
Q  398 tccttgcacaatctttcctttctccttctttcctttcactttcattcaccaaccaaa 454  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  30203344 tccttacacaatctttcctttctctttctttcctttaactttcattcaccaaccaaa 30203400  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 9899789 - 9899740
Alignment:
Q  405 acaatctttcctttctccttctttcctttcactttcattcaccaaccaaa 454  Q
    |||||||||||||||||  ||||||| |||||||| |||| |||||||||    
T  9899789 acaatctttcctttctctatctttcccttcacttttattccccaaccaaa 9899740  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 405 - 441
Target Start/End: Complemental strand, 37810148 - 37810112
Alignment:
Q  405 acaatctttcctttctccttctttcctttcactttca 441  Q
    |||||||||| |||||| |||||||||||||||||||    
T  37810148 acaatctttcttttctctttctttcctttcactttca 37810112  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 454
Target Start/End: Original strand, 41313134 - 41313190
Alignment:
Q  398 tccttgcacaatctttcctttctccttctttcctttcactttcattcaccaaccaaa 454  Q
    ||||| || |||||||||| ||||  ||||||||||||||||||||| | |||||||    
T  41313134 tccttacagaatctttcctatctctatctttcctttcactttcattcccaaaccaaa 41313190  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 398 - 454
Target Start/End: Original strand, 34721096 - 34721152
Alignment:
Q  398 tccttgcacaatctttcctttctccttctttcctttcactttcattcaccaaccaaa 454  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||  |||||||    
T  34721096 tccttgcataatctttcctttctctttctttcctttcactttcattcattaaccaaa 34721152  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 454
Target Start/End: Original strand, 31543573 - 31543629
Alignment:
Q  398 tccttgcacaatctttcctttctccttctttcctttcactttcattcaccaaccaaa 454  Q
    ||||| ||||||||||||| ||||  ||||| ||||||||||||||| | |||||||    
T  31543573 tccttacacaatctttcctatctctatcttttctttcactttcattcccaaaccaaa 31543629  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 404 - 453
Target Start/End: Original strand, 1049089 - 1049138
Alignment:
Q  404 cacaatctttcctttctccttctttcctttcactttcattcaccaaccaa 453  Q
    |||||||||||||||||| |||||||||  ||||||| ||||||||||||    
T  1049089 cacaatctttcctttctctttctttcctaccactttctttcaccaaccaa 1049138  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 29675374 - 29675325
Alignment:
Q  405 acaatctttcctttctccttctttcctttcactttcattcaccaaccaaa 454  Q
    |||||||||||||||||  ||||||| ||||||||||||| |||||||||    
T  29675374 acaatctttcctttctctatctttccattcactttcattccccaaccaaa 29675325  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Complemental strand, 46599044 - 46599015
Alignment:
Q  425 ctttcctttcactttcattcaccaaccaaa 454  Q
    ||||||||||||||||||||||||||||||    
T  46599044 ctttcctttcactttcattcaccaaccaaa 46599015  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Original strand, 4921574 - 4921623
Alignment:
Q  405 acaatctttcctttctccttctttcctttcactttcattcaccaaccaaa 454  Q
    |||||||||||||| || |||||||||| |||||||||||  ||||||||    
T  4921574 acaatctttcctttatctttctttccttacactttcattcttcaaccaaa 4921623  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 20654676 - 20654627
Alignment:
Q  405 acaatctttcctttctccttctttcctttcactttcattcaccaaccaaa 454  Q
    |||||||||| |||||| ||||||||||||||||||| ||  ||||||||    
T  20654676 acaatctttcttttctctttctttcctttcactttcactcttcaaccaaa 20654627  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 41697316 - 41697267
Alignment:
Q  405 acaatctttcctttctccttctttcctttcactttcattcaccaaccaaa 454  Q
    |||||||||||||| || |||||||||| |||||||||||  ||||||||    
T  41697316 acaatctttcctttatctttctttccttacactttcattcttcaaccaaa 41697267  T

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