View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17218_high_9 (Length: 392)
Name: NF17218_high_9
Description: NF17218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17218_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 129 - 380
Target Start/End: Complemental strand, 7350244 - 7349992
Alignment:
| Q |
129 |
gattgtttgtcccttttagtattagggaagctgattactaaccgtctatctggtaacnnnnnnnatttgtactagctaacaaaaa-gattggataggtca |
227 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7350244 |
gattgtttgtcccttttagtatcagggaagatgattactaaccgtctatctgtaaactttttttatttgtactagctaacaaaaaagattggataggtca |
7350145 |
T |
|
| Q |
228 |
tatgtccttccaatctttagttttgggattgaaatcagcataaaaagaaaaataatagccgaaagttgggattgatttgtatattatatataaaagttta |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7350144 |
tatgtccttccaatctttagttttgggattgaaatcagcgtaaaaggaaaaataatagccgaaagatgggattgatttgtatattatatataaaagttta |
7350045 |
T |
|
| Q |
328 |
tactttactagctaattattcaatttaaccacatgaaaaaaccccaaaatatt |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7350044 |
tactttactagctaattattcaatttaaccacatgaaaaaaccccaaaatatt |
7349992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 7350372 - 7350296
Alignment:
| Q |
1 |
ttgttgccatgtatatatttaacctagatactcatgttatcatcttatttaatactaatattatctctagaaagaat |
77 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7350372 |
ttgttgccatgtatatatataacctagatactcatgttatcatcttatttaatactaatattatctctagaaagaat |
7350296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 368
Target Start/End: Original strand, 21267465 - 21267524
Alignment:
| Q |
311 |
ttatatataaaagtttatactttact--agctaattattcaatttaaccacatgaaaaaa |
368 |
Q |
| |
|
|||| |||| |||||||||||||| | | ||||||||| |||||||||||||||||||| |
|
|
| T |
21267465 |
ttatctatataagtttatactttattttacctaattatttaatttaaccacatgaaaaaa |
21267524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University