View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17218_low_1 (Length: 876)
Name: NF17218_low_1
Description: NF17218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17218_low_1 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 442 - 860
Target Start/End: Original strand, 49825560 - 49825982
Alignment:
| Q |
442 |
accagtgttgtccatcacttcaatgtgcaccttgtacctaaaccattcgagaaaccatttaaatctgaatctggaaattattttataccatttgagaaac |
541 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
49825560 |
accagtgttgtccatcacttgaatgtgcaccttgtacctaaaccattcgagaaaccatttaaatctgaatctgtaaattattttataccatttgagaaac |
49825659 |
T |
|
| Q |
542 |
cattttacac----agtgcataaaaactcaattcacctgacgccaaaaggagatgacattagatttaacggcacaaccaggaggaccataatcataaaaa |
637 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
49825660 |
cattttacactgtcagtgcataaaaactcaattcacctgacgccaaaaggagaggacattagatttaacggcacaagcaggaggaccataatcataaaaa |
49825759 |
T |
|
| Q |
638 |
ccagcaacagcacgataagtcttaaactatggaatataaacaaacggcgttcaagcgcattgttaacagattgacgaaaagcttcacgcgaatcggaact |
737 |
Q |
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||||||||| |||||||| |||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49825760 |
ccagcaacaccacgataaatcttaaactacgaaatataaacaaacggcgttcaagcgcgttgttaacagattgacgaaaagcttcacgcgaatcggaact |
49825859 |
T |
|
| Q |
738 |
ggaaccagaaagcagcgattgaagcaatatctcgatttagagattgtttagcgcttgaacagcaacatcaatatcaggtttagatgcggaggatgatttt |
837 |
Q |
| |
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||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49825860 |
ggaaccagaaagcagtgattgaagggatatctcgacttagagattgtttagcgcttgaacagcaacatcaatatcaggtttagatgcggaggatgatttt |
49825959 |
T |
|
| Q |
838 |
agtgagcggacggtgttggaagg |
860 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
49825960 |
agtgagcggacggtgttggaagg |
49825982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 4 - 426
Target Start/End: Original strand, 49825101 - 49825515
Alignment:
| Q |
4 |
agatggacatcatcatacacccgcttcacagcttagttacgccatccatgcttcaagttgccatcagttatctcaactttaaacaacannnnnnngtcta |
103 |
Q |
| |
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|||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
49825101 |
agatcgacatcatcagacacccgcttcacaacttagttacgccatccatgcttcaagttgccatcagttatctcgactttaaacaacatttttttgtcta |
49825200 |
T |
|
| Q |
104 |
tgaacaaatccagatcagcaggatattcgtcattgtaatgttgtgaagagtcacaaattgattcatcagatgtccttttgaccgcatagttgcgccaatt |
203 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
49825201 |
tgaacaaatccagatcagcaggatattcgccattgtaatgttgtgaagagtcacaaattgattcatcagatgtccttttgacagcatagttgcgccaatt |
49825300 |
T |
|
| Q |
204 |
atgcattaagttcccatccgtaattccaaccttaaatagcatttgttttccaacaacaatatcaaattcatttggatactcgctcgcttgagggtttacc |
303 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| || ||||| ||||| |||||||||||||||||| |
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| T |
49825301 |
atgcattaagttcccatccgtaatttcaaccttaaatagcatttgttttccaacaaaaatatccaactcattgggata----ctcgcttgagggtttacc |
49825396 |
T |
|
| Q |
304 |
ctgatcaaatgaaacgcactccaaattaccaacatgcataaaaatacgatcgtatcacaatatnnnnnnnngatataaccaaagtgatcataatttacct |
403 |
Q |
| |
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|||||||||| ||||||||||||||||| ||||||||||||||||| ||| |||||||||| | ||||||||||||||||||||||||||| |
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| T |
49825397 |
ctgatcaaataaaacgcactccaaattaataacatgcataaaaatacaatcatatcacaata----aaaaagctataaccaaagtgatcataatttacct |
49825492 |
T |
|
| Q |
404 |
gactgtttgcctcaatcaaatct |
426 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
49825493 |
gactgtttgcctcaatcaaatct |
49825515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 555 - 692
Target Start/End: Original strand, 49234908 - 49235046
Alignment:
| Q |
555 |
gcataaaaactcaattcacctgacgccaaaaggagatgacattagatttaacggcacaaccaggaggaccataatcataaaaaccagcaacagcacgata |
654 |
Q |
| |
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||||| |||||||||||||||||||||||||| || ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
49234908 |
gcatagaaactcaattcacctgacgccaaaagatgaggacgttagatttaacagcacaaccaggaggaccataatcataaaaaccagcaacaccgcgata |
49235007 |
T |
|
| Q |
655 |
agtcttaaactatggaatat-aaacaaacggcgttcaag |
692 |
Q |
| |
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| |||||||| | ||||||| |||||||||||||||||| |
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| T |
49235008 |
aatcttaaacgaaggaatataaaacaaacggcgttcaag |
49235046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 572 - 761
Target Start/End: Original strand, 830287 - 830477
Alignment:
| Q |
572 |
acctgacgccaaaaggagatgacattagatttaacggcacaaccaggaggaccataatcataaaaaccagcaacagcacgataagtcttaaactatggaa |
671 |
Q |
| |
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||||||||||| || |||| ||||| |||||||| || |||||||| ||||||||||||||||||||||| ||| | | ||| | |||||| | |||| |
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| T |
830287 |
acctgacgccagaaagagagaacattggatttaaccgcgcaaccaggtggaccataatcataaaaaccagcgacaccgcagtaaattttaaacgacggaa |
830386 |
T |
|
| Q |
672 |
tataaacaa-acggcgttcaagcgcattgttaacagattgacgaaaagcttcacgcgaatcggaactggaaccagaaagcagcgattgaag |
761 |
Q |
| |
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| |||| || ||| |||||||| | ||| ||| ||||||||||| || ||||| |||||||| | |||| |||| || || |||||||| |
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| T |
830387 |
tgtaaaaaagacgacgttcaagtgtattaacaacggattgacgaaatgcgtcacgagaatcggagccggaagcagagagaagagattgaag |
830477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 153; Significance: 1e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 551 - 856
Target Start/End: Original strand, 941787 - 942102
Alignment:
| Q |
551 |
cagtgcataaaaactcaattcacctgacgccaaaaggagatgacattagatttaacggcacaaccaggaggaccataatcataaaaaccagcaacagcac |
650 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
941787 |
cagtgcatagaaattcaattcacctgacgccaaaaggcaaggacgttagatttaacggcacaaccaggaggaccataatcataaaaaccagcaacaccac |
941886 |
T |
|
| Q |
651 |
gataagtcttaaactatggaatat-aaacaaacggcgttcaagcgcattgttaacagattgacgaaaagcttcacgcgaatcggaactggaaccagaaag |
749 |
Q |
| |
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||||| |||||||| | ||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||| || |
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| T |
941887 |
gataaatcttaaacgaaggaatataaaacaaacggcgttcaagcgtattgttaacagattgacgaaatgcttcacgcgaatc------ggaaccagagag |
941980 |
T |
|
| Q |
750 |
cagcgattgaagcaatatctcgat---------------ttagagattgtttagcgcttgaacagcaacatcaatatcaggtttagatgcggaggatgat |
834 |
Q |
| |
|
|||||||||||| || ||||||| || ||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
941981 |
aagcgattgaagcgatttctcgatggaagatttctcaagtttgagattgtttaacgcttgaacagcagcatcgatatcaggtttagatgcggaggatgat |
942080 |
T |
|
| Q |
835 |
tttagtgagcggacggtgttgg |
856 |
Q |
| |
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|| ||||| ||||||||||||| |
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| T |
942081 |
ttgagtgaacggacggtgttgg |
942102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 3e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 555 - 694
Target Start/End: Complemental strand, 50861762 - 50861622
Alignment:
| Q |
555 |
gcataaaaactcaattcacctgacgccaaaaggagatgacattagatttaacggcacaaccaggaggaccataatcataaaaaccagcaacagcacgata |
654 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||| |
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|
| T |
50861762 |
gcatagaaactcaattcacctgacgccaaaaggagaggacgttagatttaacggcacaaccaggaggaccataatcattaaaaccagcaacaccgcgata |
50861663 |
T |
|
| Q |
655 |
agtcttaaactatggaatat-aaacaaacggcgttcaagcg |
694 |
Q |
| |
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| |||||||| | ||||||| |||||||||||||||||||| |
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| T |
50861662 |
aatcttaaacgacggaatataaaacaaacggcgttcaagcg |
50861622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 591 - 710
Target Start/End: Complemental strand, 47934481 - 47934361
Alignment:
| Q |
591 |
tgacattagatttaacggcacaaccaggaggaccataatcataaaaaccagcaacagcacgataagtcttaaactatggaatat-aaacaaacggcgttc |
689 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| | | ||||| ||||||||||||||| |
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|
| T |
47934481 |
tgacgttagatttaacaacacaaccaggaggaccataatcataaaaaccagcaacaaagagataaatcttaaacaacgaaatataaaacaaacggcgttc |
47934382 |
T |
|
| Q |
690 |
aagcgcattgttaacagattg |
710 |
Q |
| |
|
|||||||||| ||||||||| |
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|
| T |
47934381 |
aagcgcattgcaaacagattg |
47934361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 259
Target Start/End: Complemental strand, 232658 - 232573
Alignment:
| Q |
175 |
gtccttttgaccgcatagttgcgccaat-tatgcattaagttcccatccgtaattccaaccttaaatagcatttgttttccaacaa |
259 |
Q |
| |
|
||||||||||| | ||| ||||||||| | ||||| |||||||||||||||||| |||||||||| | ||||| |||||||||| |
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|
| T |
232658 |
gtccttttgacagaataattgcgccaagctctgcatcaagttcccatccgtaatttcaaccttaaacaacattttctttccaacaa |
232573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 14584717 - 14584802
Alignment:
| Q |
175 |
gtccttttgaccgcatagttgcgccaat-tatgcattaagttcccatccgtaattccaaccttaaatagcatttgttttccaacaa |
259 |
Q |
| |
|
||||||||||| | ||| ||||||||| | ||||| |||||||||||||||||| |||||||||| | ||||| |||||||||| |
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|
| T |
14584717 |
gtccttttgacagaataattgcgccaagctctgcatcaagttcccatccgtaatttcaaccttaaacaacattttctttccaacaa |
14584802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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