View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17218_low_13 (Length: 367)

Name: NF17218_low_13
Description: NF17218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17218_low_13
NF17218_low_13
[»] chr6 (5 HSPs)
chr6 (269-361)||(29950984-29951076)
chr6 (326-361)||(30037791-30037826)
chr6 (326-361)||(30040083-30040118)
chr6 (326-361)||(30153377-30153412)
chr6 (325-361)||(30148409-30148445)
[»] chr8 (5 HSPs)
chr8 (39-101)||(29362346-29362408)
chr8 (59-98)||(17707826-17707865)
chr8 (46-101)||(27111052-27111107)
chr8 (43-81)||(44996724-44996762)
chr8 (56-101)||(9840013-9840058)
[»] chr3 (6 HSPs)
chr3 (90-143)||(49559419-49559472)
chr3 (94-158)||(51280469-51280533)
chr3 (90-165)||(27007857-27007933)
chr3 (94-139)||(34073085-34073130)
chr3 (94-143)||(47183904-47183953)
chr3 (45-101)||(27007783-27007839)
[»] chr4 (5 HSPs)
chr4 (90-138)||(42158848-42158896)
chr4 (54-97)||(7741100-7741143)
chr4 (44-106)||(37149564-37149626)
chr4 (90-143)||(51480658-51480711)
chr4 (90-139)||(52440562-52440611)
[»] chr1 (4 HSPs)
chr1 (45-101)||(5522066-5522122)
chr1 (45-101)||(28055746-28055802)
chr1 (45-101)||(32505566-32505622)
chr1 (45-97)||(52293771-52293823)
[»] scaffold0110 (1 HSPs)
scaffold0110 (326-361)||(44956-44991)
[»] chr5 (5 HSPs)
chr5 (54-101)||(34444913-34444960)
chr5 (93-139)||(23251779-23251825)
chr5 (94-143)||(7119206-7119255)
chr5 (90-139)||(34445092-34445141)
chr5 (91-139)||(11494913-11494961)
[»] chr7 (2 HSPs)
chr7 (92-137)||(35341005-35341050)
chr7 (95-139)||(38831820-38831864)
[»] chr2 (2 HSPs)
chr2 (94-143)||(38768804-38768853)
chr2 (45-101)||(10673801-10673857)


Alignment Details
Target: chr6 (Bit Score: 81; Significance: 5e-38; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 269 - 361
Target Start/End: Complemental strand, 29951076 - 29950984
Alignment:
Q  269 tatgatgacgtcatcatttacacgttcagcctccactgccaatttctttcttccaattcgtcgtttacacattcagcctcttccttcgttcat 361  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  29951076 tatgatgatgtcatcatttacacgttcagcctccactgccaatttctttcttccagttcgtcgtttacacattcagcctcttcctttgttcat 29950984  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 326 - 361
Target Start/End: Original strand, 30037791 - 30037826
Alignment:
Q  326 tcgtcgtttacacattcagcctcttccttcgttcat 361  Q
    |||||| |||||||||||||||||||||||||||||    
T  30037791 tcgtcgattacacattcagcctcttccttcgttcat 30037826  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 326 - 361
Target Start/End: Original strand, 30040083 - 30040118
Alignment:
Q  326 tcgtcgtttacacattcagcctcttccttcgttcat 361  Q
    |||||| |||||||||||||||||||||||||||||    
T  30040083 tcgtcgattacacattcagcctcttccttcgttcat 30040118  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 326 - 361
Target Start/End: Original strand, 30153377 - 30153412
Alignment:
Q  326 tcgtcgtttacacattcagcctcttccttcgttcat 361  Q
    |||||| |||||||||||||||||||||||||||||    
T  30153377 tcgtcgattacacattcagcctcttccttcgttcat 30153412  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 361
Target Start/End: Original strand, 30148409 - 30148445
Alignment:
Q  325 ttcgtcgtttacacattcagcctcttccttcgttcat 361  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  30148409 ttcgtcgattacacattcagccacttccttcgttcat 30148445  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 29362408 - 29362346
Alignment:
Q  39 tagccaaaatacttattttggtcctttaagtttaacaaaaatactagattagtcctttaagtt 101  Q
    |||||||||||||||||||| || ||||||||| ||||||||||||| ||||||||| |||||    
T  29362408 tagccaaaatacttattttgatcatttaagttttacaaaaatactaggttagtccttcaagtt 29362346  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 17707826 - 17707865
Alignment:
Q  59 gtcctttaagtttaacaaaaatactagattagtcctttaa 98  Q
    ||||||||||||| |||||||||| |||||||||||||||    
T  17707826 gtcctttaagtttgacaaaaatacgagattagtcctttaa 17707865  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 27111107 - 27111052
Alignment:
Q  46 aatacttattttggtcctttaagtttaacaaaaatactagattagtcctttaagtt 101  Q
    ||||||| |||||||| || |||||| ||||||||| ||||||| |||||||||||    
T  27111107 aatacttcttttggtcattcaagtttgacaaaaatattagattaatcctttaagtt 27111052  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 44996724 - 44996762
Alignment:
Q  43 caaaatacttattttggtcctttaagtttaacaaaaata 81  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  44996724 caaaatacatattttggtcctttaagtttgacaaaaata 44996762  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 9840013 - 9840058
Alignment:
Q  56 ttggtcctttaagtttaacaaaaatactagattagtcctttaagtt 101  Q
    |||||||||||||||| | ||||||||  |||||||||||||||||    
T  9840013 ttggtcctttaagtttgataaaaataccggattagtcctttaagtt 9840058  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 49559419 - 49559472
Alignment:
Q  90 gtcctttaagttgttaatttaatgtacatatttgaaattgtttaagttttaaat 143  Q
    |||||||||||| ||||||||||| ||||||||||| || ||||||||| ||||    
T  49559419 gtcctttaagtttttaatttaatgcacatatttgaagttttttaagtttcaaat 49559472  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 51280533 - 51280469
Alignment:
Q  94 tttaagttgttaatttaatgtacatatttgaaattgtttaagttttaaat--gtctttaaaagagta 158  Q
    |||||||||||| ||||||| |||||||||||||  ||||||||||||||  ||| |||||||||||    
T  51280533 tttaagttgttagtttaatgcacatatttgaaat--tttaagttttaaattggtccttaaaagagta 51280469  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 165
Target Start/End: Original strand, 27007857 - 27007933
Alignment:
Q  90 gtcctttaagttgttaatttaatgtacatatttgaaattgtttaagttttaaat--gtctttaaaagagtatcagtgt 165  Q
    |||||||||||||||||||||||  || |||||||| || ||||||||| ||||  ||| ||||||||||| ||||||    
T  27007857 gtcctttaagttgttaatttaatacacctatttgaagtt-tttaagtttcaaataggtccttaaaagagtagcagtgt 27007933  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 34073085 - 34073130
Alignment:
Q  94 tttaagttgttaatttaatgtacatatttgaaattgtttaagtttt 139  Q
    ||||||||||||||||||||||  |||||||| || ||||||||||    
T  34073085 tttaagttgttaatttaatgtatctatttgaagttttttaagtttt 34073130  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 47183953 - 47183904
Alignment:
Q  94 tttaagttgttaatttaatgtacatatttgaaattgtttaagttttaaat 143  Q
    |||||||||||||||||||  ||||||||||| || ||||||||| ||||    
T  47183953 tttaagttgttaatttaatacacatatttgaagttttttaagtttcaaat 47183904  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 27007783 - 27007839
Alignment:
Q  45 aaatacttattttggtcctttaagtttaacaaaaatactagattagtcctttaagtt 101  Q
    |||||| | |||| |||||||||||| |||||||||||  | |||||||||||||||    
T  27007783 aaatacatcttttagtcctttaagttcaacaaaaataccggcttagtcctttaagtt 27007839  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 42158848 - 42158896
Alignment:
Q  90 gtcctttaagttgttaatttaatgtacatatttgaaattgtttaagttt 138  Q
    ||||||||||||||||||||| || ||||||||||| || |||||||||    
T  42158848 gtcctttaagttgttaatttagtgcacatatttgaagttttttaagttt 42158896  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 97
Target Start/End: Original strand, 7741100 - 7741143
Alignment:
Q  54 ttttggtcctttaagtttaacaaaaatactagattagtccttta 97  Q
    |||| ||||||||||||| |||||||||||||||||||| ||||    
T  7741100 ttttagtcctttaagtttgacaaaaatactagattagtctttta 7741143  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 37149626 - 37149564
Alignment:
Q  44 aaaatacttattttggtcctttaagtttaacaaaaatactagattagtcctttaagttgttaa 106  Q
    |||||||||||||| ||||||||| ||| ||||||||||   |||||||||||| ||| ||||    
T  37149626 aaaatacttattttagtcctttaattttgacaaaaataccgaattagtcctttacgttcttaa 37149564  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 51480658 - 51480711
Alignment:
Q  90 gtcctttaagttgttaatttaatgtacatatttgaaattgtttaagttttaaat 143  Q
    |||||||||||||||| || |||| || ||||||||||| ||||||||| ||||    
T  51480658 gtcctttaagttgttacttcaatgcacctatttgaaattttttaagtttcaaat 51480711  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 52440562 - 52440611
Alignment:
Q  90 gtcctttaagttgttaatttaatgtacatatttgaaattgtttaagtttt 139  Q
    |||||||||||||||||||||||| || ||||| || || ||||||||||    
T  52440562 gtcctttaagttgttaatttaatgcacctatttaaatttttttaagtttt 52440611  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 5522122 - 5522066
Alignment:
Q  45 aaatacttattttggtcctttaagtttaacaaaaatactagattagtcctttaagtt 101  Q
    |||||| | |||||||||||||||||| |||||| ||| || |||||||||||||||    
T  5522122 aaatacatcttttggtcctttaagtttgacaaaactaccaggttagtcctttaagtt 5522066  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 28055746 - 28055802
Alignment:
Q  45 aaatacttattttggtcctttaagtttaacaaaaatactagattagtcctttaagtt 101  Q
    |||||| | ||||||| |||||||||| |||||||||| || |||||||||||||||    
T  28055746 aaatacctcttttggttctttaagtttgacaaaaataccaggttagtcctttaagtt 28055802  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 32505622 - 32505566
Alignment:
Q  45 aaatacttattttggtcctttaagtttaacaaaaatactagattagtcctttaagtt 101  Q
    |||||||||||||| |||||||| ||| || |||||| | | |||||||||||||||    
T  32505622 aaatacttattttgctcctttaactttgacgaaaatattgggttagtcctttaagtt 32505566  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 52293771 - 52293823
Alignment:
Q  45 aaatacttattttggtcctttaagtttaacaaaaatactagattagtccttta 97  Q
    ||||||||||||| ||||||||| ||| ||||||||||  | |||||||||||    
T  52293771 aaatacttattttcgtcctttaattttgacaaaaataccgggttagtccttta 52293823  T

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Target: scaffold0110 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 326 - 361
Target Start/End: Complemental strand, 44991 - 44956
Alignment:
Q  326 tcgtcgtttacacattcagcctcttccttcgttcat 361  Q
    |||||| |||||||||||||||||||||||||||||    
T  44991 tcgtcgattacacattcagcctcttccttcgttcat 44956  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 34444913 - 34444960
Alignment:
Q  54 ttttggtcctttaagtttaacaaaaatactagattagtcctttaagtt 101  Q
    |||||||||||||||||| |||||||||   |||||||||||||||||    
T  34444913 ttttggtcctttaagtttgacaaaaatatcggattagtcctttaagtt 34444960  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 23251825 - 23251779
Alignment:
Q  93 ctttaagttgttaatttaatgtacatatttgaaattgtttaagtttt 139  Q
    |||||||||  |||||||||||||||||||||| || ||||||||||    
T  23251825 ctttaagttaataatttaatgtacatatttgaagttttttaagtttt 23251779  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 7119206 - 7119255
Alignment:
Q  94 tttaagttgttaatttaatgtacatatttgaaattgtttaagttttaaat 143  Q
    |||||||||||||||||||| || | |||||| || ||||||||||||||    
T  7119206 tttaagttgttaatttaatgcacctttttgaagttttttaagttttaaat 7119255  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 34445141 - 34445092
Alignment:
Q  90 gtcctttaagttgttaatttaatgtacatatttgaaattgtttaagtttt 139  Q
    ||||||||||||| |||||||||| ||||||||||| || || |||||||    
T  34445141 gtcctttaagttgctaatttaatgcacatatttgaagtttttcaagtttt 34445092  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 11494913 - 11494961
Alignment:
Q  91 tcctttaagttgttaatttaatgtacatatttgaaattgtttaagtttt 139  Q
    ||||||||||||||||||||||| || |||||||| || | ||||||||    
T  11494913 tcctttaagttgttaatttaatgcacctatttgaagttttataagtttt 11494961  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 35341005 - 35341050
Alignment:
Q  92 cctttaagttgttaatttaatgtacatatttgaaattgtttaagtt 137  Q
    ||||||| |||||||||||| |||| ||||||||||| ||||||||    
T  35341005 cctttaaattgttaatttaaagtacctatttgaaattttttaagtt 35341050  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 38831864 - 38831820
Alignment:
Q  95 ttaagttgttaatttaatgtacatatttgaaattgtttaagtttt 139  Q
    ||||||||||||||||||| || |||||||| || ||||||||||    
T  38831864 ttaagttgttaatttaatgaacctatttgaatttttttaagtttt 38831820  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 38768804 - 38768853
Alignment:
Q  94 tttaagttgttaatttaatgtacatatttgaaattgtttaagttttaaat 143  Q
    ||||| ||||||||||||||||  |||||||| || ||||||||||||||    
T  38768804 tttaatttgttaatttaatgtatttatttgaagttttttaagttttaaat 38768853  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 10673801 - 10673857
Alignment:
Q  45 aaatacttattttggtcctttaagtttaacaaaaatactagattagtcctttaagtt 101  Q
    |||||||  |||| ||||||||||||| ||||||||||||| | | |||||||||||    
T  10673801 aaatactacttttagtcctttaagtttgacaaaaatactaggtcaatcctttaagtt 10673857  T

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