View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17218_low_15 (Length: 354)
Name: NF17218_low_15
Description: NF17218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17218_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 20 - 338
Target Start/End: Original strand, 39283084 - 39283404
Alignment:
| Q |
20 |
aacaataatttcttttaggcaagtaagtgcgtcttatgaaataattaatcgcaataatgcaaggaataggttaatttctctaactttagatttcaattat |
119 |
Q |
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| T |
39283084 |
aacaataatttcttttaggcaagtaagtgtgtcttatgaaataattaatcgcaataatgcaaggaataggttaatttctctaactttagatttcaattat |
39283183 |
T |
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| Q |
120 |
tcatcatcacatggtgtgtttagtnnnnnnnnnncatcacatggtgtggcagtaattcttaaatacattatgttataattttcgcacctctcctttt-nn |
218 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39283184 |
tcatcatcacatggtgtgtttagtaaaaaaaaaacatcacatggtgtggcagtaattcttaaatacattatgttataattttcgcacctctccttttaaa |
39283283 |
T |
|
| Q |
219 |
nnnnnntaattttcgcacctcaattgtatggaaaaccccacttgcctaagttatttaattttcctcgcattcatcaaatctcttcgaatttt-aaacagt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39283284 |
aaaaaataattttcgcacctcaattgtatggaaaaccccacttgcctaagttatttaattttcctcgcattcatcaaatctcttcgaattttaaaacagt |
39283383 |
T |
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| Q |
318 |
tttttcctctctataaatacc |
338 |
Q |
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||||||||||||||||||||| |
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| T |
39283384 |
tttttcctctctataaatacc |
39283404 |
T |
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