View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17218_low_17 (Length: 343)
Name: NF17218_low_17
Description: NF17218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17218_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 7e-74; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 9 - 165
Target Start/End: Complemental strand, 26407639 - 26407483
Alignment:
| Q |
9 |
tgagatgaatatgaacttttgtttctcttaagttcaatttgattagtgacaagtgaatctgaacttacaaatacactattgaatatattccaaagatata |
108 |
Q |
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| T |
26407639 |
tgagatgaatatgaactcttgtttctcttaagttcaatttgattagtgacaagtgaatctgaacttacaaatacactattgaatatattccaaagatata |
26407540 |
T |
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| Q |
109 |
acggacgcttgagtgaatttgtggttgatatctaatatttgaaaagtgaatctcaca |
165 |
Q |
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| T |
26407539 |
acggaggctggagtgaatttgtggttgatatctaatatttgagaagtgaatctcaca |
26407483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 218 - 326
Target Start/End: Complemental strand, 26407336 - 26407228
Alignment:
| Q |
218 |
cacaatccaaattgaaaggtggtttctggaatctagattgttatttcttgttgatttttgaattgaaaagtattttattgttgttttcccttgaatcctt |
317 |
Q |
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| T |
26407336 |
cacaatccaaattgaaaggtggtttctggaatctagattgttatttcttgttgatttttgaattgaaaagtattttattgttgttttcccttgaatcctt |
26407237 |
T |
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| Q |
318 |
gatgattgt |
326 |
Q |
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| T |
26407236 |
gatgattgt |
26407228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 70 - 165
Target Start/End: Complemental strand, 26407464 - 26407369
Alignment:
| Q |
70 |
aacttacaaatacactattgaatatattccaaagatataacggacgcttgagtgaatttgtggttgatatctaatatttgaaaagtgaatctcaca |
165 |
Q |
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| T |
26407464 |
aacttccaaatacactattgaatatattcaaaagatataacggaggcttgagtgaatttgtggttgatatctaatatttgagaagtgaatctcaca |
26407369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 11434178 - 11434062
Alignment:
| Q |
14 |
tgaatatgaacttttgtttctcttaagttcaatttgattagtgacaagtgaatctgaactta-caaatacactattgaatatattccaaagatataacgg |
112 |
Q |
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| T |
11434178 |
tgaatctgaacttttgtttatat-aagttcaatctgatcacacacaagtgaatttgaacttttcaaatacactataaaatatattccaaagatacaatgg |
11434080 |
T |
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| Q |
113 |
acgcttgagtgaatttgt |
130 |
Q |
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| T |
11434079 |
aggcttgtgtgtatttgt |
11434062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 7170137 - 7170211
Alignment:
| Q |
76 |
caaatacactattgaatatattccaaagatataacggacgcttgagtgaatttgtggttgatatctaatatttga |
150 |
Q |
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| T |
7170137 |
caaatacactatagaagatgttccagagatataatggaggcttgagtgtatttgtgcttgcaatctaatgtttga |
7170211 |
T |
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