View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17218_low_18 (Length: 316)
Name: NF17218_low_18
Description: NF17218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17218_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 14 - 303
Target Start/End: Complemental strand, 26951840 - 26951551
Alignment:
| Q |
14 |
cagttctctctattttcgatgcactaatatatgtatatactgcttttcttctgccttttccatttctaggttgtaaccgcgtatatgatgattcagaccc |
113 |
Q |
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| T |
26951840 |
cagttctctctattttcgatgcactaatatatgtagatactgcttttcttctgccttttccatttctaggttgtaaccgcgtatatgatgattcagaccc |
26951741 |
T |
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| Q |
114 |
taaacaagaggggatataatgcatttgccttctccattccttcaatgaaggaatttctgacaatacttagccttgctgctcctgtatatttgacgtcgat |
213 |
Q |
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| T |
26951740 |
taaacaagaggggatataatgcatttgccttctccattccttcaatgaaggaatttctgacaatacttagccttgctgctccagtatatttgacgtcgat |
26951641 |
T |
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| Q |
214 |
atcaaaggttacatcaagtgttttagtatatttctggagtagtttaaccttttaatataactcttaagttatgatgttcaggtggctttc |
303 |
Q |
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| T |
26951640 |
atcaaaggttacatcaagtgttttagtatatttctggagtagtttaaccttttaatataactcttaagttatgatgttcaggtggctttc |
26951551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 124 - 248
Target Start/End: Complemental strand, 26988643 - 26988519
Alignment:
| Q |
124 |
gggatataatgcatttgccttctccattccttcaatgaaggaatttctgacaatacttagccttgctgctcctgtatatttgacgtcgatatcaaaggtt |
223 |
Q |
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|||||| ||||||||| ||||| ||||||||||| ||||||||||||| ||||| |||| |||||||||||||||| | |||| | ||| | ||||||| |
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| T |
26988643 |
gggatacaatgcattttccttcaccattccttcagggaaggaatttctgtcaatatttagtcttgctgctcctgtatttgtgacattgatgttaaaggtt |
26988544 |
T |
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| Q |
224 |
acatcaagtgttttagtatatttct |
248 |
Q |
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| T |
26988543 |
gaatcaagtattttgctatatttct |
26988519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 124 - 237
Target Start/End: Complemental strand, 27003424 - 27003311
Alignment:
| Q |
124 |
gggatataatgcatttgccttctccattccttcaatgaaggaatttctgacaatacttagccttgctgctcctgtatatttgacgtcgatatcaaaggtt |
223 |
Q |
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|||||| ||||||||||||||| ||||||||||| ||||||||||||| ||||| | || |||||||||||||||| | |||| | ||| | ||||||| |
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| T |
27003424 |
gggatacaatgcatttgccttcaccattccttcagggaaggaatttctgtcaatattaagtcttgctgctcctgtatttgtgacattgatgttaaaggtt |
27003325 |
T |
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| Q |
224 |
acatcaagtgtttt |
237 |
Q |
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||||||| |||| |
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| T |
27003324 |
gaatcaagtatttt |
27003311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 95 - 200
Target Start/End: Original strand, 26978791 - 26978896
Alignment:
| Q |
95 |
tatatgatgattcagaccctaaacaagaggggatataatgcatttgccttctccattccttcaatgaaggaatttctgacaatacttagccttgctgctc |
194 |
Q |
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|||||||||| || || |||| ||||| |||||| || |||||| |||||||||||||||| ||||||||||||| ||||| |||| ||||| |||| |
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| T |
26978791 |
tatatgatgagccaaactctaatcaagaagggatacaaggcattttccttctccattccttcggggaaggaatttctgtcaatatttagtcttgcagctc |
26978890 |
T |
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| Q |
195 |
ctgtat |
200 |
Q |
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|||||| |
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| T |
26978891 |
ctgtat |
26978896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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