View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17218_low_2 (Length: 650)
Name: NF17218_low_2
Description: NF17218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17218_low_2 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 576; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 47 - 650
Target Start/End: Original strand, 29789971 - 29790574
Alignment:
| Q |
47 |
ataccccacgtcgtgcatcttgccttccaacaccaacatagagtagttaagaagagcgtaactaaattcatcaaatcttgagtagcatgaagatcactcc |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29789971 |
ataccccacgtcgtgcatcttgccttccaacaccaacatagagtagttaagaagagcgtaactaaattcatcaaatcttgagtagcatgaagatcactcc |
29790070 |
T |
|
| Q |
147 |
aaaggatcccacagaaaaaagttggagataatttagagtttaagtttgtggtttacttaacgcaatgatctttcacgttatagcattattcattcacgag |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29790071 |
aaaggatcccacagaaaaaagttggagataatttagagtttaagtttgtggtttacttaacgcaatgatctttcacgttatagcattattcattcacgag |
29790170 |
T |
|
| Q |
247 |
ataatgccaaaaactaattgttttttctagtgaatcacgggaaagtttagtagatatgttgacaattatacacaatcaattaaaaaattagatacttgtg |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29790171 |
ataatgccaaaaactaattgttttttctagtgaatcacgggaaagtttagtagatatgttgacaattatacacaatcaattaaaaaattagatacttgtg |
29790270 |
T |
|
| Q |
347 |
caaccannnnnnnncaatttgacttgttgatagagtactgttaatgacccaaattatcaaactatcatagtctaattacaatattcccagaaagacacac |
446 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29790271 |
caaccattttttttcaatttgacttgttgatagagtactgttaatgacccaaattatcaaactatcatagtctaattacaatattcccagaaagacacac |
29790370 |
T |
|
| Q |
447 |
agtaatggcataccaatccaaaattaaccaaaaacatgtgattaaactccccggagaatgttagagtttagaggagcatctcatgtctttgctcttgctc |
546 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29790371 |
agtaatggcataccaatccaaaattaaccaaaaacatgtgattaaactccccggagaatgttagagtttagaggagcatctcatgtctttgctcttgctc |
29790470 |
T |
|
| Q |
547 |
attgatattgtcactgtcatccagagaaaatgggcatccattgtctctttgcatggacatatgaagacatgaggagttatatatttgaacaaaggtttca |
646 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29790471 |
attgatattgtcactgtcatccagagaaaatgggcatccattgtctctttgcatggacatatgaagacatgaggagttatatatttgaacaaaggcttca |
29790570 |
T |
|
| Q |
647 |
ctta |
650 |
Q |
| |
|
|||| |
|
|
| T |
29790571 |
ctta |
29790574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University