View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17218_low_20 (Length: 294)
Name: NF17218_low_20
Description: NF17218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17218_low_20 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 37850702 - 37850403
Alignment:
| Q |
1 |
catttaggttctcagtagcctccaacacttgcttatgaaggccagacagcttccttccttctcctcgtttattagaaatccttttgttaagatcagaggt |
100 |
Q |
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| T |
37850702 |
catttaggttctcagtagcctccaacacttgcttatgaaggtcaggcagcttccttcctcctcctcgtttattagaaatccttttattaagatcagaggt |
37850603 |
T |
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| Q |
101 |
ccttttcaattcatctctattgagatacattcgaattattattagcagcgctacagatatacatatcgaggatccaagtactatcgtcacaattttaagt |
200 |
Q |
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| T |
37850602 |
ccttttcaattcatctctattgagatacattcgaattattattagcagtggtacagatatacatatcgaggatccaagtactatcgtcacaattttaagt |
37850503 |
T |
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| Q |
201 |
tcact------tatgtgaccagttgatttgtcgacacagagatttacataaacagatttaatgcaactcgaacaacataggagaggattacccatgaatg |
294 |
Q |
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| T |
37850502 |
tcactgatccctatgtgaccagttgatttgtcgacacagagatttacataaacagatttaatgcaactcgaacaacataggagaggattacccatgaatg |
37850403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 28089731 - 28089623
Alignment:
| Q |
87 |
ttaagatcagaggtccttttcaattcatctctattgagatacattcgaattattattagcagcgctacagatatacatatcgaggatccaagtactatcg |
186 |
Q |
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||||||| | ||| |||||||||||||| ||||| |||||||||| |||||||||| | |||| | |||| || |||| |||||||||||| ||||| |
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| T |
28089731 |
ttaagataaaaggcccttttcaattcatttctatggagatacatttgaattattatcaccagcacatcagaaatcaatattgaggatccaagttctatca |
28089632 |
T |
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| Q |
187 |
tcacaattt |
195 |
Q |
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| T |
28089631 |
tcacaattt |
28089623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 195
Target Start/End: Complemental strand, 37837241 - 37837135
Alignment:
| Q |
89 |
aagatcagaggtccttttcaattcatctctattgagatacattcgaattattattagcagcgctacagatatacatatcgaggatccaagtactatcgtc |
188 |
Q |
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||||| ||||| || ||||||||||| ||||| |||||||||||||| |||||| | || | | |||| || |||| |||||||||||||||||| | |
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| T |
37837241 |
aagataagaggcccctttcaattcatttctatggagatacattcgaaatattatcaccatcacagcagaaatcaatattgaggatccaagtactatcatt |
37837142 |
T |
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| Q |
189 |
acaattt |
195 |
Q |
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| T |
37837141 |
acaattt |
37837135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 36866064 - 36866009
Alignment:
| Q |
1 |
catttaggttctcagtagcctccaacacttgcttatgaaggccagacagcttcctt |
56 |
Q |
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||||||||||||| ||||| ||||||||||| | ||||||| ||| |||||||||| |
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| T |
36866064 |
catttaggttctctgtagcttccaacacttgatcatgaaggtcaggcagcttcctt |
36866009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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