View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17218_low_22 (Length: 290)
Name: NF17218_low_22
Description: NF17218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17218_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 38097702 - 38097531
Alignment:
| Q |
16 |
cactatctgcgttaggtttatacgcttggtcaataataacaggattcttcacttcattaagtatgatatcttcgtatgtaatgttcctcgcatatccaga |
115 |
Q |
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| T |
38097702 |
cactatctgcgttagggttatacgcttggtcaataatcacaggattcttcacttcattaagtatgatatcttcgtatgtaatgttcctcgcatatccaga |
38097603 |
T |
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| Q |
116 |
tcctccctaattcaaataacaaaacatgtatactctttttagaactatttttaatttgggtctaactcaact |
187 |
Q |
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| T |
38097602 |
tcctccctaattcaaataacaaaacatatatactattcttataactatttttaaatttggtctaactcaact |
38097531 |
T |
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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 187
Target Start/End: Complemental strand, 21551981 - 21551879
Alignment:
| Q |
81 |
atatcttcgtatgtaatgttcctcgcatatccagatcctccctaattcaaataacaaaacatgtatactctttttagaactatttttaatttgggtctaa |
180 |
Q |
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| T |
21551981 |
atatcttcgtatttaatgttccttgcatatccagatccaccctaattcaaa---caaaacatgaataataatctta-aactacttttaatttaggtctaa |
21551886 |
T |
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| Q |
181 |
ctcaact |
187 |
Q |
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| T |
21551885 |
ctcaact |
21551879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 187
Target Start/End: Original strand, 19056351 - 19056490
Alignment:
| Q |
47 |
aataataacaggattcttcacttcattaagtatgatatcttcgtatgtaatgttcctcgcatatccagatcctccctaattcaaataacaaaacatgtat |
146 |
Q |
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| T |
19056351 |
aataataatagggttcttgacttctacaagtttaatattttcgtatgtgatcttccttgcatacccacttcctccctaattcaaacaacaaaacatatat |
19056450 |
T |
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| Q |
147 |
actctttttagaactatttttaatttgggtctaactcaact |
187 |
Q |
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| T |
19056451 |
gttattatgagaa-tattttgaatttggatttaactcaact |
19056490 |
T |
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