View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17218_low_23 (Length: 283)
Name: NF17218_low_23
Description: NF17218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17218_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 14 - 268
Target Start/End: Complemental strand, 25895880 - 25895626
Alignment:
| Q |
14 |
agacaggaaagaactcttctcacgaagagaaaattagcaaacaaaagagaattacgagaaacggtgattgcaaggctggtgaaaacgcaaaccctagcac |
113 |
Q |
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| T |
25895880 |
agacaggaaagaactcttctcacggggagaaaattatcaaacaaaagagaattacgagaaacggtgattgcaaggctggtgaaaacgcaaaccctagcac |
25895781 |
T |
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| Q |
114 |
cgcttcagaatagttatcgctaaattgcaaaacttagtttaaacgcaaaccctagcacaacattcttaattttattcaactgaaatgatgtaatacaaaa |
213 |
Q |
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| T |
25895780 |
cgcttcagaatagttatcgctaaattgcaaaacttagtttaaacgcaaaccctagcacaacattcttaattttattcaactgaaatgatgtaatacaaaa |
25895681 |
T |
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| Q |
214 |
tgtatgatatatttatgtaattgtatactacatgacaagtcatatcatttgttag |
268 |
Q |
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| T |
25895680 |
tgtatgatatattcatgtaattgtatactacatgacaagtcatatcatttgttag |
25895626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 170 - 239
Target Start/End: Complemental strand, 25910920 - 25910851
Alignment:
| Q |
170 |
acaacattcttaattttattcaactgaaatgatgtaatacaaaatgtatgatatatttatgtaattgtat |
239 |
Q |
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||||||||||| ||||||| || ||||||||||||||||| ||||||| ||||||| |||||||||||| |
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| T |
25910920 |
acaacattctttgttttatttaattgaaatgatgtaatacagaatgtataatatattcatgtaattgtat |
25910851 |
T |
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