View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17218_low_26 (Length: 251)
Name: NF17218_low_26
Description: NF17218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17218_low_26 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 42935487 - 42935248
Alignment:
| Q |
13 |
aatattaagtagggaataaacttaaaaacttgcaattttatagagactaaaacatattttacccgataaaaatcaactttctgagaggccaattaatggt |
112 |
Q |
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| T |
42935487 |
aatattaagtaaggactaaacttaaaaacttgcaattttatagggactaaaacatattttacccgataaaaatcaactttctgagaggccaattaatggt |
42935388 |
T |
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| Q |
113 |
tgatagcattggcatt-aaaattcttcaagaaaggtagatacagttgttgctgcataatataacacgacaatcacatgctgccagtttatttattaannn |
211 |
Q |
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| T |
42935387 |
tgatagcattggcattaaaaattcttcaagaaaggtagatacagttgttgctgcataatataacatgacaatcacatgctaccagtttatttattaattt |
42935288 |
T |
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| Q |
212 |
nnnnagtgtgtttttatagaaatcacaatctcatacatat |
251 |
Q |
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| T |
42935287 |
ttttagtgtgtttttatagaaatcacaatctcatacatat |
42935248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 5459102 - 5459059
Alignment:
| Q |
21 |
gtagggaataaacttaaaaacttgcaattttatagagactaaaa |
64 |
Q |
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| T |
5459102 |
gtagggactaaacttaaaaacttataattttatagagactaaaa |
5459059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 40391093 - 40391156
Alignment:
| Q |
21 |
gtagggaataaacttaaaaacttgcaattttatagagact-aaaacatattttacccgataaaa |
83 |
Q |
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| T |
40391093 |
gtagggactaaacttaaaaacttgtaattttatagggactaaaaacatatttaaccctataaaa |
40391156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 30801982 - 30801939
Alignment:
| Q |
29 |
taaacttaaaaacttgcaattttatagagactaaaacatatttta |
73 |
Q |
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| T |
30801982 |
taaacttaaaaacttgtaattttatag-gactaaaaaatatttta |
30801939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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