View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17218_low_3 (Length: 567)
Name: NF17218_low_3
Description: NF17218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17218_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 4 - 243
Target Start/End: Original strand, 13726451 - 13726690
Alignment:
| Q |
4 |
ccttgtaatggatacggtaacactaagatgtgtggtgcatgttttttgcttttattctccattgatttttgtggtgtctcttttcttctggaatgtgttt |
103 |
Q |
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| T |
13726451 |
ccttgtaatggatatggaaacactaagatgtgtggtgcatgttttttgcttttattctccattgatttttgtggtgtctcttttcttctggaatgtgttt |
13726550 |
T |
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| Q |
104 |
atatatgaagaagggtgtaaaagtaatagacataatgatattctaatcaatgaatccattgaacaaaaaagattgcaaagcatcaattgattgtgacctt |
203 |
Q |
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| T |
13726551 |
atatatgaagaagggtgtaaaagtaatagacataatgatattctaatcaatgaatgcattgaacaaaaaagatagcaaagcatcaagtgattgtgacctt |
13726650 |
T |
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| Q |
204 |
tccatgtaggatttagaccttttcctaatgtggtgtggca |
243 |
Q |
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| T |
13726651 |
tccatgtaggattttgaccttttcctaatgtggtgtggca |
13726690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 283 - 505
Target Start/End: Original strand, 13726980 - 13727204
Alignment:
| Q |
283 |
caccaacatcgagcatttcaatagaaggaagaacaacaatgccaacttggggaaannnnnnn-atattgtagcaaaagatgttcaatacaaggaggataa |
381 |
Q |
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| T |
13726980 |
caccaacatcgagcatttcaatagaaggaaggacaacaatgccaacttggggaaactttttttatattgtagcaaaagatgttcaatacaaggaggataa |
13727079 |
T |
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| Q |
382 |
ttctcaaaaat-atggggacaagaccaagaacaggtcgccgtagcaagactatgagcaagtgtgtttgtttgttgcctaataaacttcacgttaaagcta |
480 |
Q |
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| T |
13727080 |
ttctcaaaaattacggtgacaagaccaagaacaggtcgccgtagcaagactatgagcaagcgtgtttgtttgttgcctaataaacttcacgttaaagcta |
13727179 |
T |
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| Q |
481 |
attcaatattaatagaagatataat |
505 |
Q |
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| T |
13727180 |
attcaatattaatagaagatataat |
13727204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 504 - 549
Target Start/End: Original strand, 13728657 - 13728702
Alignment:
| Q |
504 |
atggcataaaactatgaaactccttgatgagggacctaacagtgtg |
549 |
Q |
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| T |
13728657 |
atggtataaaattatgaaactccttgatgagggacctaacagtgtg |
13728702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 439
Target Start/End: Complemental strand, 5542701 - 5542617
Alignment:
| Q |
355 |
aaaagatgttcaatacaaggaggataattctcaaaaatatggggacaagaccaagaacaggtcgccgtagcaagactatgagcaa |
439 |
Q |
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| T |
5542701 |
aaaagaggtttagtacaaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaa |
5542617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 428
Target Start/End: Original strand, 49525056 - 49525120
Alignment:
| Q |
364 |
tcaatacaaggaggataattctcaaaaatatggggacaagaccaagaacaggtcgccgtagcaag |
428 |
Q |
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| T |
49525056 |
tcaatacaaggaggacaaatctcaaaaatatggtgactagtccaagaacagaccgccctagcaag |
49525120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 467
Target Start/End: Original strand, 8670176 - 8670279
Alignment:
| Q |
364 |
tcaatacaaggaggataattctcaaaaatatggggacaagaccaagaacaggtcgccgtagcaagactatgagcaagtgtgtttgtttgttgcctaataa |
463 |
Q |
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| T |
8670176 |
tcaatacaaggaagacaaatctcaaagatacggtgactagtccaagaacaggccgccctagtaagagtgtgagcaaccatgtttgtttgtcgcctaacaa |
8670275 |
T |
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| Q |
464 |
actt |
467 |
Q |
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|||| |
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| T |
8670276 |
actt |
8670279 |
T |
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