View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17218_low_30 (Length: 239)
Name: NF17218_low_30
Description: NF17218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17218_low_30 |
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| [»] scaffold0066 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 34264078 - 34264002
Alignment:
| Q |
22 |
gaagaatgttgaattataaatatgaagagcaattggaatttgattcaattgtaaaaatgtggatgtgaatgaattga |
98 |
Q |
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| T |
34264078 |
gaagaattttgaattataaatatgaagagcaattggaatttgattcaattgtaaaaatatggatgtgaatgaattga |
34264002 |
T |
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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 214
Target Start/End: Original strand, 49234122 - 49234212
Alignment:
| Q |
124 |
ttaaaattcagactagtcatcaactcgatcaatgtactaagttcttgatcgaataactaggttatcaattaaaccacatgatttaactgaa |
214 |
Q |
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| T |
49234122 |
ttaaaaatcatactagtcttcaactcgatcaatgtattaggtctttaatcgaacaactaagttatcaattaaactacataatttacctgaa |
49234212 |
T |
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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 33641212 - 33641166
Alignment:
| Q |
168 |
ttgatcgaataactaggttatcaattaaaccacatgatttaactgaa |
214 |
Q |
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| T |
33641212 |
ttgatcgaagaactaagttattaattaaaccacatgatttaactgaa |
33641166 |
T |
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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 211
Target Start/End: Original strand, 24551468 - 24551555
Alignment:
| Q |
124 |
ttaaaattcagactagtcatcaactcgatcaatgtactaagttcttgatcgaataactaggttatcaattaaaccacatgatttaact |
211 |
Q |
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| T |
24551468 |
ttaaaaatgagactagttttcaactcgatcaatgtactaggtcattgatccaacaactaagttatcaattaaaccacataatttaact |
24551555 |
T |
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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 214
Target Start/End: Complemental strand, 11766083 - 11766012
Alignment:
| Q |
143 |
tcaactcgatcaatgtactaagttcttgatcgaataactaggttatcaattaaaccacatgatttaactgaa |
214 |
Q |
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| T |
11766083 |
tcaactcgatcaatgtactaggtaattgattgaacaactaaattatcaattaaaccacatgatttaactgaa |
11766012 |
T |
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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 209
Target Start/End: Complemental strand, 25623379 - 25623294
Alignment:
| Q |
124 |
ttaaaattcagactagtcatcaactcgatcaatgtactaagttcttgatcgaataactaggttatcaattaaaccacatgatttaa |
209 |
Q |
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| T |
25623379 |
ttaaaattcagactacttttcaactcgatcgttgtactaggtctttgatcgaacagttagattatcaattaaacgacatgatttaa |
25623294 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 53225512 - 53225455
Alignment:
| Q |
39 |
aaatatgaagagcaattggaatttgattcaattgtaaaaatgtggatgtgaatgaatt |
96 |
Q |
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| T |
53225512 |
aaatatgaagagcaattggaatttgattcaattgaaaaaatatggatgcaaatgaatt |
53225455 |
T |
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Target: scaffold0066 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 191
Target Start/End: Complemental strand, 41855 - 41788
Alignment:
| Q |
124 |
ttaaaattcagactagtcatcaactcgatcaatgtactaagttcttgatcgaataactaggttatcaa |
191 |
Q |
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| T |
41855 |
ttaaaaatcagactagttttcaactcgatcaatgtactaggtcattgatcgaacaactaagttatcaa |
41788 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 191
Target Start/End: Complemental strand, 11441114 - 11441047
Alignment:
| Q |
124 |
ttaaaattcagactagtcatcaactcgatcaatgtactaagttcttgatcgaataactaggttatcaa |
191 |
Q |
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| T |
11441114 |
ttaaaaatcagactagttttcaactcgatcaatgtactaggtcattgatcgaacaactaagttatcaa |
11441047 |
T |
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