View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17218_low_5 (Length: 511)
Name: NF17218_low_5
Description: NF17218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17218_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 137 - 497
Target Start/End: Complemental strand, 40258203 - 40257844
Alignment:
| Q |
137 |
tcgagatatgtatcatgttagtagcaa--tacatatatgtactctatgagtatctaagtttgtacctatacattttacccacactttaacaatgaaccaa |
234 |
Q |
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| T |
40258203 |
tcgagatatgtatcatgttagtagcaacttcaatatctgtactctatgagtatctaagtttgtaactatacatgttacccacactttaacaatgaaggaa |
40258104 |
T |
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| Q |
235 |
agccctctagttgnnnnnnnatcgtatttttgtgtaacaccttagtcatctatcttttaaagcatgcacaatgnnnnnnn-cccaattcaaaaacacttg |
333 |
Q |
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| T |
40258103 |
agccctctagttgtttttttatcttatttttgtgtaacaccttagtcatctatcttttaaagcatgcacaatgttttttttcccaattcaaaaacacttg |
40258004 |
T |
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| Q |
334 |
tgtgttgcaaacctagatattaattatagtgactacccattattagatgatgctttgctttatctgcatgtgtgatttttgttagcaatattgtgttgct |
433 |
Q |
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| T |
40258003 |
tgtgttgcaaacctagatatta----tagtgactacccattattagatgatgctttgctttatctgcatgtgtgatttttgttagcaatattgtgttgct |
40257908 |
T |
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| Q |
434 |
taacatgctttcctaagttttcctgtagtgaatcaccaattttcgttgtcaaataaaaatatgt |
497 |
Q |
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| T |
40257907 |
taacatgctttcgtaagttttcctgtactgaatcaccaattttcgttgtcaaataaaaatatgt |
40257844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 40258246 - 40258188
Alignment:
| Q |
63 |
ttcataaattattataaaatagctgtaaaaatatcatttctcatcgatatatgtatcat |
121 |
Q |
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| T |
40258246 |
ttcaaaaattatcataaaatggttgtataaatatcatttctcatcgagatatgtatcat |
40258188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 444
Target Start/End: Complemental strand, 4666011 - 4665975
Alignment:
| Q |
408 |
atttttgttagcaatattgtgttgcttaacatgcttt |
444 |
Q |
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| T |
4666011 |
atttttgttagcaatattgtgttggttaacatgcttt |
4665975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 10344369 - 10344323
Alignment:
| Q |
59 |
gttgttcataaattattataaaatagctgtaaaaatatcatttctca |
105 |
Q |
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| T |
10344369 |
gttgtccaaaaattattataaaatagatgtacaaatatcatttctca |
10344323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 37754492 - 37754447
Alignment:
| Q |
59 |
gttgttcataaattattataaaatagctgtaaaaatatcatttctc |
104 |
Q |
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| T |
37754492 |
gttgtccaaaaattattataaaatagatgtacaaatatcatttctc |
37754447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 4319805 - 4319769
Alignment:
| Q |
68 |
aaattattataaaatagctgtaaaaatatcatttctc |
104 |
Q |
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| T |
4319805 |
aaattattataaaatagttgtacaaatatcatttctc |
4319769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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