View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17218_low_8 (Length: 409)

Name: NF17218_low_8
Description: NF17218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17218_low_8
NF17218_low_8
[»] chr7 (4 HSPs)
chr7 (16-328)||(47427521-47427833)
chr7 (339-387)||(47427482-47427530)
chr7 (320-389)||(5006558-5006627)
chr7 (267-383)||(44151476-44151592)
[»] chr6 (1 HSPs)
chr6 (319-385)||(1402952-1403018)
[»] chr3 (4 HSPs)
chr3 (316-384)||(37689429-37689497)
chr3 (233-385)||(36646344-36646496)
chr3 (339-385)||(1395627-1395673)
chr3 (266-383)||(40122748-40122864)
[»] chr2 (4 HSPs)
chr2 (319-384)||(18962086-18962151)
chr2 (339-381)||(37292415-37292457)
chr2 (340-385)||(17952770-17952815)
chr2 (337-385)||(31461394-31461442)
[»] chr5 (3 HSPs)
chr5 (321-385)||(39128595-39128659)
chr5 (338-385)||(35135729-35135776)
chr5 (323-379)||(8158353-8158409)
[»] scaffold0590 (1 HSPs)
scaffold0590 (342-385)||(1145-1188)
[»] scaffold0275 (1 HSPs)
scaffold0275 (342-385)||(2787-2830)
[»] chr4 (4 HSPs)
chr4 (338-385)||(4071838-4071885)
chr4 (338-385)||(30024656-30024703)
chr4 (274-385)||(49219095-49219206)
chr4 (324-385)||(45128363-45128424)
[»] chr8 (1 HSPs)
chr8 (280-389)||(28769348-28769457)
[»] chr1 (1 HSPs)
chr1 (340-384)||(28467376-28467420)


Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 328
Target Start/End: Complemental strand, 47427833 - 47427521
Alignment:
Q  16 atcaagtaagcctctgcagaaactttccaaatatttgaacaaagaagattatgtaatataaccagtattcaatttggatgtcaatccatcctattgaaaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47427833 atcaagtaagcctctgcagaaactttccaaatatttgaacaaagaagattatgtaatataaccagtattcaatttggatgtcaatccatcctattgaaaa 47427734  T
Q  116 ttcattctaacaaagtttttggctaatttccagttacatgttttgtaactggaatcggtttaaggtttgtttggattaatttatttgaacttagctatag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47427733 ttcattctaacaaagtttttggctaatttccagttacatgttttgtaactggaatcggtttaaggtttgtttggattaatttatttgaacttagctatag 47427634  T
Q  216 aagtaaacacatgtgagttgtgagactatttggcaaaatttacggaaaccgtttatgacatctacataagatgtttccatcttatttccacaaattttct 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47427633 aagtaaacacatgtgagttgtgagactatttggcaaaatttacggaaaccgtttatgacatctacataagatgtttccatcttatttccacaaattttct 47427534  T
Q  316 aaaatagcttata 328  Q
    |||||||||||||    
T  47427533 aaaatagcttata 47427521  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 339 - 387
Target Start/End: Complemental strand, 47427530 - 47427482
Alignment:
Q  339 atagcttatatgagaatacttttactttattttgtcttttgttatagga 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47427530 atagcttatatgagaatacttttactttattttgtcttttgttatagga 47427482  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 389
Target Start/End: Original strand, 5006558 - 5006627
Alignment:
Q  320 tagcttataaaaataatctatagcttatatgagaatacttttactttattttgtcttttgttataggaat 389  Q
    |||||||| |||| ||| |||| ||||||||| || | ||| |||||||||| |||||||||||||||||    
T  5006558 tagcttatgaaaacaatttataccttatatgaaaacagtttgactttattttatcttttgttataggaat 5006627  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 383
Target Start/End: Original strand, 44151476 - 44151592
Alignment:
Q  267 tttatgacatctacataagatgtttccatcttatttccacaaattttctaaaatagcttataaaaataatctatagcttatatgagaatacttttacttt 366  Q
    |||||||||| | |||||||||||| || |||||||||| ||  |||  || |||| |||| |||| ||  |||||||||||||  || | |||||||||    
T  44151476 tttatgacatgtccataagatgttttcagcttatttccataagcttttcaagatagtttatgaaaacaacttatagcttatatggaaacagttttacttt 44151575  T
Q  367 attttgtcttttgttat 383  Q
    ||| | |||||||||||    
T  44151576 attctatcttttgttat 44151592  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 319 - 385
Target Start/End: Complemental strand, 1403018 - 1402952
Alignment:
Q  319 atagcttataaaaataatctatagcttatatgagaatacttttactttattttgtcttttgttatag 385  Q
    ||||||||| |||| ||| |||||||||||||| |||| ||| |||||||||| |||||||||||||    
T  1403018 atagcttatgaaaacaatttatagcttatatgaaaatagtttaactttattttatcttttgttatag 1402952  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 316 - 384
Target Start/End: Original strand, 37689429 - 37689497
Alignment:
Q  316 aaaatagcttataaaaataatctatagcttatatgagaatacttttactttattttgtcttttgttata 384  Q
    |||||||||||| |||||| | |||||||||||||| |||| ||| |||||| ||| ||||||||||||    
T  37689429 aaaatagcttatgaaaatagtttatagcttatatgaaaataatttaactttactttatcttttgttata 37689497  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 385
Target Start/End: Original strand, 36646344 - 36646496
Alignment:
Q  233 ttgtgagactatttggcaaaatttacggaaaccgtttatgacatctacataagatgtttccatcttatttccacaaattttctaaaatagcttataaaaa 332  Q
    |||| ||||||||||| | |  ||| |||||||  ||||| ||| | |||||| ||||| ||||||||||| | ||| | ||||  ||||||||| ||||    
T  36646344 ttgtaagactatttgggagagcttatggaaaccacttatggcatgtccataagctgttttcatcttatttctataaactctctaggatagcttatgaaaa 36646443  T
Q  333 taatctatagcttatatgagaatacttttactttattttgtcttttgttatag 385  Q
     ||  |||| ||||||||| || | || ||||||||||| |||||||| ||||    
T  36646444 caagttataacttatatgaaaacaattatactttattttatcttttgtcatag 36646496  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 385
Target Start/End: Complemental strand, 1395673 - 1395627
Alignment:
Q  339 atagcttatatgagaatacttttactttattttgtcttttgttatag 385  Q
    ||||||||||||| |||| ||| |||||||||| |||||||||||||    
T  1395673 atagcttatatgaaaataatttgactttattttatcttttgttatag 1395627  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 383
Target Start/End: Original strand, 40122748 - 40122864
Alignment:
Q  266 gtttatgacatctacataagatgtttccatcttatttccacaaattttctaaaatagcttataaaaataatctatagcttatatgagaatacttttactt 365  Q
    |||||||||||||  ||||| |||||  | ||||||||||  || ||| ||  |||||||||||||| ||  |||||||| ||||| || | ||| ||||    
T  40122748 gtttatgacatctctataagttgtttttagcttatttccattaactttttaggatagcttataaaaacaacttatagctt-tatgaaaacagtttgactt 40122846  T
Q  366 tattttgtcttttgttat 383  Q
    |||||| |||||||||||    
T  40122847 tattttatcttttgttat 40122864  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 384
Target Start/End: Original strand, 18962086 - 18962151
Alignment:
Q  319 atagcttataaaaataatctatagcttatatgagaatacttttactttattttgtcttttgttata 384  Q
    ||||||||| |||||| | |||||||||||||| || | ||| |||||||||| ||||||||||||    
T  18962086 atagcttatgaaaatagtttatagcttatatgaaaacagtttaactttattttatcttttgttata 18962151  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 381
Target Start/End: Original strand, 37292415 - 37292457
Alignment:
Q  339 atagcttatatgagaatacttttactttattttgtcttttgtt 381  Q
    ||||||||||||| |||| |||||||||||||| |||||||||    
T  37292415 atagcttatatgaaaatagttttactttattttatcttttgtt 37292457  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 385
Target Start/End: Original strand, 17952770 - 17952815
Alignment:
Q  340 tagcttatatgagaatacttttactttattttgtcttttgttatag 385  Q
    |||||||||||| |||| ||| |||||||||| |||||||||||||    
T  17952770 tagcttatatgaaaatagtttgactttattttatcttttgttatag 17952815  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 385
Target Start/End: Complemental strand, 31461442 - 31461394
Alignment:
Q  337 ctatagcttatatgagaatacttttactttattttgtcttttgttatag 385  Q
    |||||||||| | ||||||| ||| |||||||||| |||||||||||||    
T  31461442 ctatagcttacaggagaataatttgactttattttatcttttgttatag 31461394  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 385
Target Start/End: Complemental strand, 39128659 - 39128595
Alignment:
Q  321 agcttataaaaataatctatagcttatatgagaatacttttactttattttgtcttttgttatag 385  Q
    |||||||||||||| | ||||| |||| |||||| | ||| |||||||||| |||||||||||||    
T  39128659 agcttataaaaatagtttatagtttatttgagaacaatttgactttattttatcttttgttatag 39128595  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 338 - 385
Target Start/End: Original strand, 35135729 - 35135776
Alignment:
Q  338 tatagcttatatgagaatacttttactttattttgtcttttgttatag 385  Q
    |||||||||||||| |||| ||| |||||||||| |||||||||||||    
T  35135729 tatagcttatatgaaaatagtttgactttattttatcttttgttatag 35135776  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 379
Target Start/End: Original strand, 8158353 - 8158409
Alignment:
Q  323 cttataaaaataatctatagcttatatgagaatacttttactttattttgtcttttg 379  Q
    ||||| |||||||| || ||||||||||| |||| ||| |||||||||| |||||||    
T  8158353 cttatgaaaataatttaaagcttatatgaaaataatttaactttattttatcttttg 8158409  T

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Target: scaffold0590 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 342 - 385
Target Start/End: Original strand, 1145 - 1188
Alignment:
Q  342 gcttatatgagaatacttttactttattttgtcttttgttatag 385  Q
    ||||||||||||||| ||| |||||||||| |||||||||||||    
T  1145 gcttatatgagaatagtttgactttattttatcttttgttatag 1188  T

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Target: scaffold0275 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 342 - 385
Target Start/End: Complemental strand, 2830 - 2787
Alignment:
Q  342 gcttatatgagaatacttttactttattttgtcttttgttatag 385  Q
    ||||||||||||||| ||| |||||||||| |||||||||||||    
T  2830 gcttatatgagaatagtttgactttattttatcttttgttatag 2787  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 338 - 385
Target Start/End: Complemental strand, 4071885 - 4071838
Alignment:
Q  338 tatagcttatatgagaatacttttactttattttgtcttttgttatag 385  Q
    |||||||||||||| |||| ||| |||||||||| |||||||||||||    
T  4071885 tatagcttatatgaaaataatttgactttattttatcttttgttatag 4071838  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 338 - 385
Target Start/End: Complemental strand, 30024703 - 30024656
Alignment:
Q  338 tatagcttatatgagaatacttttactttattttgtcttttgttatag 385  Q
    |||||||||||||| || | |||||||||||||| |||||||||||||    
T  30024703 tatagcttatatgaaaacaattttactttattttatcttttgttatag 30024656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 385
Target Start/End: Complemental strand, 49219206 - 49219095
Alignment:
Q  274 catctacataagatgtttccatcttatttccacaaattttctaaaatagcttataaaaataatctatagcttatatgagaatacttttactttattttgt 373  Q
    ||||| |||||| ||||| || |||||||||| ||  | | ||| |||| |||| |||| ||  |||||||||||||| |||| ||| |||||||||| |    
T  49219206 catctccataagttgttttcagcttatttccataatctctttaagatagtttatgaaaacaacttatagcttatatgaaaataatttgactttattttat 49219107  T
Q  374 cttttgttatag 385  Q
     |||||||||||    
T  49219106 attttgttatag 49219095  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 385
Target Start/End: Original strand, 45128363 - 45128424
Alignment:
Q  324 ttataaaaataatctatagcttatatgagaatacttttactttattttgtcttttgttatag 385  Q
    |||| |||| ||| ||||||||||||||||||| ||| | || ||||| |||||||||||||    
T  45128363 ttatgaaaacaatttatagcttatatgagaataatttgatttgattttatcttttgttatag 45128424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 389
Target Start/End: Original strand, 28769348 - 28769457
Alignment:
Q  280 cataagatgtttccatcttatttccacaaattttctaaaatagcttataaaaataatctatagcttatatgagaatacttttactttattttgtcttttg 379  Q
    |||||| ||||| || |||||||||| ||| | || |||||||||||| |||| |   ||||||||||| || |||| ||| |||| ||||| |  ||||    
T  28769348 cataagttgttttcagcttatttccataaactctccaaaatagcttatgaaaacagcttatagcttataagaaaatagtttgacttaattttatagtttg 28769447  T
Q  380 ttataggaat 389  Q
    ||||||||||    
T  28769448 ttataggaat 28769457  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 384
Target Start/End: Original strand, 28467376 - 28467420
Alignment:
Q  340 tagcttatatgagaatacttttactttattttgtcttttgttata 384  Q
    |||||||||||| |||| ||| |||||||||| ||||||||||||    
T  28467376 tagcttatatgaaaataatttgactttattttatcttttgttata 28467420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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