View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17218_low_9 (Length: 406)
Name: NF17218_low_9
Description: NF17218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17218_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 394
Target Start/End: Complemental strand, 32113187 - 32112805
Alignment:
| Q |
19 |
atacataggatgttttgaatagtttttcacctaatttcatttttgactagttttcaaacaaaaccaaaaattcaatttcaat------ggtgttgacttt |
112 |
Q |
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| T |
32113187 |
atacataggatgttttgaatagtttttcacctaatttcatttttgactagttttcaaacaaaaccaaaaattcaatttcaatttcaatggtgttgacttt |
32113088 |
T |
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| Q |
113 |
tcacttcagaaatggtcctaggcctactccttggggcttcttgattgaatatgcacaagatgtaagagggtatttttt-cttcttctgccttcacaagac |
211 |
Q |
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| T |
32113087 |
tcactttagacatggtcctaggcctactccttggggcttcttgattgaatatgcacaagatgtaagagggtatttttttcttcttctgccttcacaagat |
32112988 |
T |
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| Q |
212 |
gtatgaggttgagtccaatacgtgggttcttctttgaaatcttagtatcggataccttgactagaacctgccatcaattaaatgttgtaaatgcgtatat |
311 |
Q |
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| T |
32112987 |
gtatgaggttgagtccaatacgtgggttcttctttgaaatcttagtatctgataccttgactagaatctgccatcaattaaatgttgtaaatgcgtatat |
32112888 |
T |
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| Q |
312 |
gtgaattcatagatgatcgttacaatgtttacttttagaaaacattttcagttttcattttctaaataacttaacaagcccta |
394 |
Q |
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| T |
32112887 |
gtgaattcatagatgatcgttacaatgtttacttttagaaaacattttcagttttcattttctaaataacttaacaagcccta |
32112805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 378
Target Start/End: Original strand, 2511134 - 2511176
Alignment:
| Q |
336 |
atgtttacttttagaaaacattttcagttttcattttctaaat |
378 |
Q |
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| T |
2511134 |
atgtttactttatgaaaacattttctgttttcattttctaaat |
2511176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 377
Target Start/End: Complemental strand, 39425110 - 39425070
Alignment:
| Q |
337 |
tgtttacttttagaaaacattttcagttttcattttctaaa |
377 |
Q |
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| T |
39425110 |
tgtttactttttaaaatcattttcagttttcattttctaaa |
39425070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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