View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17219_high_1 (Length: 509)
Name: NF17219_high_1
Description: NF17219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17219_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 163 - 492
Target Start/End: Complemental strand, 9638536 - 9638202
Alignment:
| Q |
163 |
tccagtagaatgaactaaactcgttcatacaatatgatgaatcaat----aaatcatggctaagagagaggtccatatttaatggagattatataaactt |
258 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9638536 |
tccagtagaatgaactaaactcgctcatacaatatgatgaatcaatgtttaaatcatggctaagagagaggtccatatttaatggagattatataaactt |
9638437 |
T |
|
| Q |
259 |
acgtgaaaattttccacctctcaactaaactcgttctaagttccaccagatatttggatacgctttgtttcgccgcca-cagtgtgcttatgaggtattt |
357 |
Q |
| |
|
||||||||||| | || | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9638436 |
acgtgaaaattgttcaacactcaactaaacacgttctaagttccaccagatatttggatacgctttgtttcgccgccaacagtgtgcttatgaggtattt |
9638337 |
T |
|
| Q |
358 |
ttaaacatagcaattatagataaacaataattatgttcacaagtgttatcacagcccattgtgtaagggatttgtgcccctaaaacaagtgcctacaaag |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9638336 |
ttaaacatagcaattatagataaacaataattatgttcacaagtgttatcacagcccattgtgtaagggatttgtgcccctaaaacaagtgcctacaaag |
9638237 |
T |
|
| Q |
458 |
ttactgtaacatttcttggtatgcaagcttccgat |
492 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
9638236 |
ttactgtaacatttcttggtatgcaagcttccgat |
9638202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University