View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17219_high_10 (Length: 279)
Name: NF17219_high_10
Description: NF17219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17219_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 10 - 179
Target Start/End: Original strand, 10427739 - 10427908
Alignment:
| Q |
10 |
agataattctatacgattagtataatatcttttgggtgaaatggaatgaagttcattcatatcatcaatcacatgatcaatatatttatagaagtgagta |
109 |
Q |
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| T |
10427739 |
agataattctatacgattagtataatatcttttgggtgaaatggaatgaagttcattcatatcatcaatcacatgatcaatatatttatagaagtgagta |
10427838 |
T |
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| Q |
110 |
cttatatgacgagttgagatgtgttatgctagatgtcctaaaaatttgatcggataaataacttttcatt |
179 |
Q |
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| T |
10427839 |
cttatatgacgagttgagatgtgttatgctagatgtcctaaaaatttgatcggataaataacttttcatt |
10427908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 224
Target Start/End: Original strand, 10431205 - 10431244
Alignment:
| Q |
185 |
agtgacaaatgttacgttgtaagtaggaaggtatgttagt |
224 |
Q |
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| T |
10431205 |
agtgacaaatgttacgttgtaagtaggaaggtatgttagt |
10431244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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