View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17219_high_14 (Length: 249)
Name: NF17219_high_14
Description: NF17219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17219_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 38484175 - 38483943
Alignment:
| Q |
1 |
aagaaaaattatcaacctcttattagcttcaacagaccattctttgtcgtggtttctctgcttccatgtcttcgtataaaagtaagaaaaaacaacgacc |
100 |
Q |
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| T |
38484175 |
aagaaaaactatcaacctcttattagcttcaacagaccattctttgtcgtggtttctctgcttccatgtcttcgtataaaagtaagaaaaaacaacgacc |
38484076 |
T |
|
| Q |
101 |
caccctgcagcaacgatacttttcagcaccatcctaactccaagcaacttcgtctcccttgaaaccaacctccattgcataactatatcaagcaaagatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38484075 |
caccctgcagcaacgatacttttcagcaccatcctaactccaagcaacttcgtctcccttgaaaccaacctccattgcataactatatcaagcaaagatt |
38483976 |
T |
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| Q |
201 |
gaaaaaacctcaaaccactccacgtaaaaacaa |
233 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
38483975 |
gaaaaaacctcaaaccactccatgtaaaaacaa |
38483943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 107 - 228
Target Start/End: Complemental strand, 30118468 - 30118347
Alignment:
| Q |
107 |
gcagcaacgatacttttcagcaccatcctaactccaagcaacttcgtctcccttgaaaccaacctccattgcataactatatcaagcaaagattgaaaaa |
206 |
Q |
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|||||||| |||| |||||| | |||||| |||||||||| ||| |||||||| || |||||||| | ||||| | | |||||||||||| || |||| |
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| T |
30118468 |
gcagcaacaatacatttcagaaacatcctcactccaagcatctttgtctccctcgataccaacctatactgcatgcccacatcaagcaaagactgcaaaa |
30118369 |
T |
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| Q |
207 |
acctcaaaccactccacgtaaa |
228 |
Q |
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|||||| ||||||||| ||||| |
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| T |
30118368 |
acctcataccactccatgtaaa |
30118347 |
T |
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