View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17219_high_2 (Length: 429)
Name: NF17219_high_2
Description: NF17219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17219_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 15 - 422
Target Start/End: Original strand, 451450 - 451860
Alignment:
| Q |
15 |
ctatttcccagaactgctcatgtttgatatattgaattgaaaagagttgtaatttcttgggtttctggattttgtgcatttgttatgttataacttataa |
114 |
Q |
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| T |
451450 |
ctatttcccacaactgctcatgtttgatatattgaattgaaaagagttgtaatttcttgggtttctggattttgtgcatttgttatgttataacttataa |
451549 |
T |
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| Q |
115 |
taggtgttgcttatgcagcaccaacattgctcttgttttcatcccttctttttgtatctgttagttcaatatcaacaaattaaattcaa-----tatgta |
209 |
Q |
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| T |
451550 |
taggtgttgcctatgcagcaccaacattgctcttgttttcatcccttctttttgtatctgttagttcaatatcaacaaattaaattcaatatgttatgta |
451649 |
T |
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| Q |
210 |
tttggaccagccacatttacacataacatgcaaccataatgctgaannnnnnnncaatataattgtcactaaagtttatatgtggtgaggtttacaaatt |
309 |
Q |
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| T |
451650 |
tttggaccagccacgtttacacataacatgcaaccataatgctgaattttttttcaatataattgtcactaaagtttatatgtggtgaggtttacaaatt |
451749 |
T |
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| Q |
310 |
cacaaccactccaaagaacaaaataatgaaaagtaataatcctctatggtacttataatcatcactcattttcctctatgatatctttacctcagtataa |
409 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
451750 |
cacaagcactccaaagaacaaaataatgaaaagtaataatcctctatggtacttataatcatcactcattttcctctatg--atctttacctcagtataa |
451847 |
T |
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| Q |
410 |
taaatgacctttg |
422 |
Q |
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| T |
451848 |
taaatgacctttg |
451860 |
T |
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