View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17219_high_5 (Length: 356)
Name: NF17219_high_5
Description: NF17219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17219_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 17 - 338
Target Start/End: Complemental strand, 16635013 - 16634691
Alignment:
| Q |
17 |
taggatttaggtcttacacttctagcccgagctttttcaaggctttttaatatcgccttaaatagcccgctatccattagggttaacccgtatggacaat |
116 |
Q |
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| T |
16635013 |
taggatttagatcttacacttctagcccgaattatttcagggctttttaatctcgccctaaataacctgttatccattagggttagtccgtatggacaat |
16634914 |
T |
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| Q |
117 |
gagtagtccgtttgatctagataattaaaaacattaaacaaattactaatatttatgaagcactaaaactttatctttatttagccacacatatatttta |
216 |
Q |
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|||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
16634913 |
gagtagcccatttgatctagataattaaaaacattaaataaattactaatatttatgaagcactaaaactttacctttatttagccacacatatatttta |
16634814 |
T |
|
| Q |
217 |
tttgatcgaaccagttaaaagatagtttaatgcataaatgtaaaagaaataaataacctcaagttttattgaaatgaaaagtttata-ttttatgaactt |
315 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
16634813 |
tttgatcgaaccagttaaaagatagtttaacgcataaatgtaaaagaaataaataacttcaagttttattgaaatgaaaagtttatatttttatgaactt |
16634714 |
T |
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| Q |
316 |
ttaaactttaaaacatcgtcgtt |
338 |
Q |
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||||||||||||||||||||||| |
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| T |
16634713 |
ttaaactttaaaacatcgtcgtt |
16634691 |
T |
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