View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17219_low_10 (Length: 291)

Name: NF17219_low_10
Description: NF17219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17219_low_10
NF17219_low_10
[»] chr6 (22 HSPs)
chr6 (115-274)||(3857064-3857222)
chr6 (12-106)||(17598562-17598656)
chr6 (12-115)||(31976247-31976350)
chr6 (12-94)||(11427638-11427720)
chr6 (12-106)||(32869686-32869780)
chr6 (12-117)||(30341358-30341463)
chr6 (12-116)||(15990040-15990144)
chr6 (12-119)||(31110759-31110864)
chr6 (12-114)||(15508022-15508124)
chr6 (12-106)||(22880656-22880750)
chr6 (12-122)||(23128125-23128235)
chr6 (12-114)||(4231548-4231650)
chr6 (12-106)||(28536486-28536578)
chr6 (12-118)||(12732478-12732584)
chr6 (12-118)||(15832573-15832679)
chr6 (12-106)||(29857835-29857929)
chr6 (12-117)||(6209463-6209568)
chr6 (48-106)||(946384-946442)
chr6 (12-106)||(9379710-9379804)
chr6 (12-102)||(31109398-31109488)
chr6 (12-102)||(31953028-31953118)
chr6 (49-115)||(22422053-22422119)
[»] chr1 (34 HSPs)
chr1 (12-117)||(32813244-32813349)
chr1 (12-118)||(5958998-5959104)
chr1 (12-106)||(27564733-27564827)
chr1 (12-106)||(47452318-47452412)
chr1 (14-115)||(51898683-51898784)
chr1 (14-117)||(2581912-2582015)
chr1 (12-115)||(37926436-37926539)
chr1 (12-118)||(8346386-8346492)
chr1 (12-106)||(43140-43234)
chr1 (12-106)||(9474874-9474968)
chr1 (12-106)||(44548374-44548468)
chr1 (12-114)||(50590998-50591100)
chr1 (12-120)||(26440728-26440836)
chr1 (15-119)||(37649193-37649297)
chr1 (16-116)||(38632323-38632423)
chr1 (12-116)||(49811525-49811629)
chr1 (12-115)||(50630457-50630560)
chr1 (12-106)||(3000327-3000421)
chr1 (12-118)||(38595150-38595256)
chr1 (12-114)||(41608491-41608593)
chr1 (16-106)||(48716284-48716374)
chr1 (16-106)||(26274440-26274530)
chr1 (16-113)||(44453980-44454077)
chr1 (12-83)||(41758836-41758907)
chr1 (12-116)||(45044558-45044662)
chr1 (14-93)||(11152378-11152457)
chr1 (12-119)||(47748438-47748544)
chr1 (44-106)||(34340069-34340130)
chr1 (14-71)||(3302533-3302590)
chr1 (44-117)||(23597121-23597194)
chr1 (14-71)||(48489343-48489400)
chr1 (12-83)||(13414792-13414863)
chr1 (12-83)||(44332369-44332440)
chr1 (14-114)||(6260870-6260970)
[»] chr3 (35 HSPs)
chr3 (12-120)||(11347920-11348028)
chr3 (12-114)||(26141530-26141632)
chr3 (12-116)||(27714889-27714993)
chr3 (12-116)||(41189762-41189866)
chr3 (12-118)||(49607410-49607516)
chr3 (12-114)||(20764913-20765015)
chr3 (12-114)||(47531865-47531967)
chr3 (12-114)||(51419358-51419460)
chr3 (12-106)||(53982019-53982113)
chr3 (12-116)||(54868893-54868997)
chr3 (12-106)||(31456697-31456791)
chr3 (12-106)||(33644208-33644302)
chr3 (12-106)||(52629308-52629402)
chr3 (12-115)||(8956761-8956864)
chr3 (12-115)||(17470404-17470507)
chr3 (12-115)||(24699952-24700055)
chr3 (12-115)||(35536625-35536728)
chr3 (12-116)||(33118849-33118953)
chr3 (41-116)||(11095380-11095455)
chr3 (12-103)||(26754706-26754797)
chr3 (12-116)||(35965780-35965876)
chr3 (12-106)||(8076401-8076495)
chr3 (12-106)||(14623837-14623931)
chr3 (12-106)||(30801731-30801825)
chr3 (12-106)||(48587089-48587183)
chr3 (12-73)||(36331327-36331388)
chr3 (12-116)||(11907369-11907473)
chr3 (12-98)||(13898053-13898139)
chr3 (12-83)||(9563030-9563101)
chr3 (12-73)||(25407145-25407207)
chr3 (12-114)||(45058551-45058652)
chr3 (12-88)||(42823137-42823213)
chr3 (119-175)||(46472372-46472428)
chr3 (46-117)||(36707456-36707527)
chr3 (40-116)||(35093583-35093659)
[»] chr2 (36 HSPs)
chr2 (12-119)||(42257188-42257295)
chr2 (12-114)||(40613900-40614002)
chr2 (12-116)||(9058478-9058582)
chr2 (12-120)||(38273140-38273248)
chr2 (12-115)||(5574486-5574589)
chr2 (12-118)||(45097733-45097839)
chr2 (12-116)||(10249380-10249484)
chr2 (12-119)||(33436098-33436205)
chr2 (12-106)||(13438351-13438445)
chr2 (12-106)||(17473028-17473122)
chr2 (12-106)||(28381653-28381747)
chr2 (12-106)||(28863463-28863557)
chr2 (14-115)||(32505648-32505749)
chr2 (12-115)||(33436210-33436313)
chr2 (12-106)||(19930818-19930912)
chr2 (12-114)||(38732354-38732456)
chr2 (12-106)||(40701486-40701580)
chr2 (16-115)||(2533123-2533221)
chr2 (12-115)||(7465733-7465836)
chr2 (12-119)||(20700810-20700917)
chr2 (12-115)||(36168835-36168938)
chr2 (12-93)||(2997485-2997566)
chr2 (14-106)||(4060693-4060785)
chr2 (12-116)||(30915461-30915565)
chr2 (12-106)||(41575145-41575240)
chr2 (16-114)||(43490121-43490219)
chr2 (12-106)||(27864712-27864806)
chr2 (14-71)||(3737986-3738043)
chr2 (12-73)||(13365394-13365455)
chr2 (12-117)||(26891502-26891607)
chr2 (46-112)||(41758587-41758653)
chr2 (12-64)||(3034981-3035033)
chr2 (12-64)||(3154193-3154245)
chr2 (41-117)||(38882841-38882916)
chr2 (43-114)||(17820033-17820104)
chr2 (46-116)||(17823782-17823852)
[»] chr7 (37 HSPs)
chr7 (12-106)||(3784003-3784097)
chr7 (12-113)||(35522877-35522978)
chr7 (12-116)||(19436185-19436289)
chr7 (12-115)||(3434561-3434664)
chr7 (12-115)||(36362025-36362128)
chr7 (12-106)||(19329850-19329944)
chr7 (12-116)||(36208171-36208275)
chr7 (12-115)||(36361911-36362014)
chr7 (12-93)||(3694388-3694469)
chr7 (12-117)||(40957704-40957809)
chr7 (12-116)||(7389387-7389491)
chr7 (14-118)||(7727902-7728006)
chr7 (12-114)||(32564424-32564526)
chr7 (12-122)||(41915733-41915843)
chr7 (20-114)||(46374808-46374902)
chr7 (12-116)||(8080381-8080485)
chr7 (12-122)||(8238203-8238315)
chr7 (12-115)||(22343360-22343463)
chr7 (12-115)||(46033799-46033902)
chr7 (12-106)||(4999512-4999606)
chr7 (12-118)||(35468853-35468959)
chr7 (12-106)||(38267048-38267142)
chr7 (12-118)||(38837213-38837319)
chr7 (12-116)||(38044195-38044299)
chr7 (44-118)||(18207176-18207250)
chr7 (12-114)||(21234401-21234503)
chr7 (12-106)||(32951491-32951585)
chr7 (12-102)||(35137545-35137635)
chr7 (12-115)||(26296643-26296746)
chr7 (12-119)||(40846111-40846218)
chr7 (12-114)||(41423682-41423784)
chr7 (48-117)||(10343597-10343666)
chr7 (12-114)||(31735884-31735979)
chr7 (12-83)||(16374822-16374893)
chr7 (44-114)||(39255953-39256023)
chr7 (20-115)||(12310905-12310998)
chr7 (65-117)||(11044185-11044237)
[»] chr5 (26 HSPs)
chr5 (12-114)||(28177775-28177877)
chr5 (12-115)||(2740273-2740376)
chr5 (12-115)||(6679697-6679800)
chr5 (12-106)||(13811660-13811754)
chr5 (12-114)||(26720516-26720618)
chr5 (12-114)||(26990265-26990367)
chr5 (12-106)||(33149636-33149730)
chr5 (12-114)||(35943890-35943992)
chr5 (14-106)||(14831822-14831914)
chr5 (12-116)||(15409608-15409712)
chr5 (12-115)||(2252166-2252269)
chr5 (12-106)||(18520882-18520976)
chr5 (12-106)||(35785207-35785301)
chr5 (12-117)||(3921263-3921368)
chr5 (14-118)||(31008984-31009088)
chr5 (12-116)||(36732940-36733044)
chr5 (16-91)||(42414304-42414379)
chr5 (12-106)||(40145415-40145509)
chr5 (12-116)||(39688895-39688999)
chr5 (12-103)||(33825322-33825413)
chr5 (12-116)||(9603811-9603915)
chr5 (13-117)||(38296200-38296304)
chr5 (12-91)||(39557515-39557594)
chr5 (40-93)||(16327922-16327975)
chr5 (51-106)||(10356642-10356698)
chr5 (55-106)||(36875644-36875695)
[»] chr8 (30 HSPs)
chr8 (12-112)||(10621085-10621185)
chr8 (12-106)||(1179938-1180032)
chr8 (12-106)||(5957838-5957932)
chr8 (12-114)||(43414579-43414681)
chr8 (12-106)||(15197341-15197435)
chr8 (12-106)||(34012294-34012388)
chr8 (14-115)||(37038478-37038579)
chr8 (12-115)||(32032724-32032826)
chr8 (12-106)||(504119-504213)
chr8 (12-106)||(14547930-14548024)
chr8 (12-114)||(15048180-15048281)
chr8 (12-118)||(16056399-16056505)
chr8 (12-118)||(16383373-16383479)
chr8 (12-116)||(24307791-24307895)
chr8 (12-106)||(12831055-12831149)
chr8 (12-106)||(23122595-23122689)
chr8 (12-106)||(40423941-40424035)
chr8 (12-116)||(4854861-4854965)
chr8 (12-116)||(34307214-34307318)
chr8 (12-117)||(10284629-10284734)
chr8 (12-116)||(15258927-15259031)
chr8 (35-118)||(24307625-24307708)
chr8 (12-115)||(44507085-44507188)
chr8 (12-93)||(8841430-8841511)
chr8 (12-116)||(42221513-42221617)
chr8 (12-70)||(9122229-9122287)
chr8 (12-114)||(30479472-30479574)
chr8 (12-114)||(38229429-38229530)
chr8 (44-106)||(20074964-20075026)
chr8 (12-115)||(17443824-17443927)
[»] chr4 (38 HSPs)
chr4 (12-118)||(50052426-50052532)
chr4 (12-116)||(55475189-55475293)
chr4 (12-115)||(50813890-50813993)
chr4 (12-114)||(40574779-40574881)
chr4 (16-116)||(29547961-29548061)
chr4 (12-116)||(32766956-32767060)
chr4 (12-106)||(6034052-6034146)
chr4 (12-106)||(41236355-41236449)
chr4 (12-118)||(42044365-42044471)
chr4 (12-116)||(48183047-48183151)
chr4 (14-106)||(50526171-50526263)
chr4 (12-115)||(47986207-47986310)
chr4 (12-118)||(480445-480551)
chr4 (12-106)||(11511460-11511554)
chr4 (12-118)||(19670714-19670820)
chr4 (12-114)||(31910192-31910294)
chr4 (12-82)||(56300163-56300233)
chr4 (12-114)||(8343161-8343263)
chr4 (12-93)||(17983741-17983822)
chr4 (12-117)||(29239883-29239988)
chr4 (12-91)||(29977908-29977987)
chr4 (12-70)||(41823926-41823984)
chr4 (16-106)||(54473535-54473625)
chr4 (12-115)||(29234243-29234346)
chr4 (35-114)||(55079735-55079814)
chr4 (12-106)||(3481662-3481756)
chr4 (12-115)||(44536744-44536846)
chr4 (13-115)||(28480267-28480369)
chr4 (13-115)||(28481142-28481244)
chr4 (13-115)||(28482017-28482119)
chr4 (12-93)||(24995105-24995186)
chr4 (12-73)||(29589738-29589799)
chr4 (12-116)||(23608233-23608337)
chr4 (12-116)||(47104542-47104646)
chr4 (12-116)||(48647724-48647828)
chr4 (40-70)||(18769153-18769183)
chr4 (12-114)||(29535377-29535478)
chr4 (12-106)||(53352564-53352657)
[»] scaffold0321 (1 HSPs)
scaffold0321 (12-118)||(10107-10213)
[»] scaffold0018 (1 HSPs)
scaffold0018 (12-73)||(152539-152600)
[»] scaffold1268 (1 HSPs)
scaffold1268 (12-106)||(927-1021)
[»] scaffold1267 (1 HSPs)
scaffold1267 (12-106)||(927-1021)
[»] scaffold0237 (1 HSPs)
scaffold0237 (12-106)||(4037-4131)
[»] scaffold0316 (1 HSPs)
scaffold0316 (12-71)||(17097-17156)


Alignment Details
Target: chr6 (Bit Score: 148; Significance: 4e-78; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 115 - 274
Target Start/End: Original strand, 3857064 - 3857222
Alignment:
Q  115 ttttaaaatcattccgtttaagaacctacgttggttgaatggttcaaaagatacatgatgcgtcagtggctaaacaatgctgagcaactttttgtttcta 214  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3857064 ttttaaaatcattccgtttgagaacctacgttggttgaatggttcaaaagatacatgatgcgtcagtggctaaacaatgctgagcaactttttgtttcta 3857163  T
Q  215 tccatttccattggttttatgatttcaacattcaagataatttattagatgatattttgt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3857164 tccatttccattggttttatgatttcaacattcaagataatttattagat-atattttgt 3857222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 17598656 - 17598562
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| || ||||  |||| |||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||    
T  17598656 agagaaagtgtgcttgtgcggggtccacgtgacaacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtat 17598562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 31976350 - 31976247
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| || | ||| |||||||||||||||||||||||||||||| ||| | | |||| ||||||||| |||||||||||| ||||    
T  31976350 agagaaagtgtgcttgtgcggggttcatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtatattgccacctaaggatgtctatgtatcataa 31976251  T
Q  112 ctct 115  Q
    ||||    
T  31976250 ctct 31976247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 11427720 - 11427638
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaaga 94  Q
    ||||||||||||||||||| |||||||  |||| ||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  11427720 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaaga 11427638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 32869780 - 32869686
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| || ||||  |||| ||||||||||||||||||||||||||||| | |||||| |||||||||  |||||||||||    
T  32869780 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtat 32869686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 30341358 - 30341463
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||| ||||||| || |||||||| |||| |||||||||||||||||||||||||  | |||||| |||||||||  ||| ||||||| ||||    
T  30341358 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 30341457  T
Q  112 ctcttt 117  Q
    ||||||    
T  30341458 ctcttt 30341463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 15990040 - 15990144
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||| ||||||| || |||||||| |||| |||||||||||||||||||||||||  | |||||| |||||||||  ||| ||||||| ||||    
T  15990040 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 15990139  T
Q  112 ctctt 116  Q
    |||||    
T  15990140 ctctt 15990144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 31110759 - 31110864
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    |||||||||||||||||||||| ||||| ||   |||||||||||||||||| |  ||||||| | |||||| ||||||||| |||||||||||| ||||    
T  31110759 agagaaagtgtgcttgtgcagggtccatgtggttacgtgtcagatttttgtgag--tgtcaaagggtgtattgccacctaaggatgtctatgtatcataa 31110856  T
Q  112 ctctttta 119  Q
    ||||||||    
T  31110857 ctctttta 31110864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 15508022 - 15508124
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||| ||||||| || |||||||| |||| |||||||||||||||||||||||||  | |||||| |||||||||  ||| ||||||| ||||    
T  15508022 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 15508121  T
Q  112 ctc 114  Q
    |||    
T  15508122 ctc 15508124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 22880656 - 22880750
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| || ||||  |||| |||||||||| |||||||||||||||||| | |||||| |||||||||  |||||||||||    
T  22880656 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagaattttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtat 22880750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 23128125 - 23128235
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||  |||||||  |||| ||||||||||||||||||||||||||||| ||||||||| ||| |||   ||||||| ||| || |    
T  23128125 agagaaagtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattatcacataaaggtgtctatatatcatta 23128224  T
Q  112 ctcttttaaaa 122  Q
     ||||||||||    
T  23128225 ttcttttaaaa 23128235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 4231650 - 4231548
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||| ||||||| || |||||||| |||||||||||||||||||||||||| |||  | |||||| ||||||||  |||| |||| || ||||    
T  4231650 agagaaagtgtacttgtgcggggtccatatggccacgtgtcagatttttgtgtgggtggcaaggggtgtattgccacctaatgatgtttatgaatcataa 4231551  T
Q  112 ctc 114  Q
    |||    
T  4231550 ctc 4231548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 28536486 - 28536578
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||  || |||| ||||||  ||||||||||||||||||||||||||  | |||||| ||||||||| |||| |||||||    
T  28536486 agagaaagtgtgcttgtgtggggtccacatgacc--gtgtcagatttttgtgtgggtgtcaagggttgtattgccacctaaggatgtttatgtat 28536578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 12732584 - 12732478
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||| ||||||| ||  ||||||| ||  ||||||||||||||||||||||||||||||    | |||| |||| ||||||||||||||||| || |    
T  12732584 agagaaaatgtgcttatgtgggatccacatagccacgtgtcagatttttgtgtgggtgtcaatgattatattgccacttaagaatgtctatgtatcatta 12732485  T
Q  112 ctctttt 118  Q
    |||||||    
T  12732484 ctctttt 12732478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 15832679 - 15832573
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||| |||  ||||||||||||||  |||| |||||||| |||||||||||||||||||| ||| ||||  |||||||   ||||||||||| || |    
T  15832679 agagaaaatgtatttgtgcaggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaatgatttattgtcacctaaaggtgtctatgtatcatta 15832580  T
Q  112 ctctttt 118  Q
    |||||||    
T  15832579 ctctttt 15832573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 29857929 - 29857835
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||| ||| |||||||  | || ||||||||||||||||||||||||| ||||| |||||| ||| ||||   |||||||||||    
T  29857929 agagaaagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtat 29857835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 6209463 - 6209568
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    |||||||||||||| |||| || ||||  |||| ||||| |||||||||||||| ||||||||   |||||| |||||||||  ||||||||||| || |    
T  6209463 agagaaagtgtgctagtgcggggtccacgtgactacgtgacagatttttgtgtgagtgtcaaatagtgtattgccacctaagggtgtctatgtatcatta 6209562  T
Q  112 ctcttt 117  Q
    ||||||    
T  6209563 ctcttt 6209568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 946442 - 946384
Alignment:
Q  48 gtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    |||||||||||||| || ||||||||| | ||||||| |||||||| ||||||||||||    
T  946442 gtgtcagatttttgggtaggtgtcaaagggtgtattatcacctaaggatgtctatgtat 946384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 9379710 - 9379804
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||| |||| |||||   |||||| ||| |||||||||| |||||||| ||||||||||  ||||||||  || ||||| ||||||||||||    
T  9379710 agagaaaatgtgtttgtgtgagatccacatggccacgtgtcaaatttttgtatgggtgtcaagggatgtattgtcatctaaggatgtctatgtat 9379804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 31109398 - 31109488
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctat 102  Q
    ||||||||||| ||| ||| || || |  |||| ||||||||||||||||||||| ||||||| | |||||| |||||||||  |||||||    
T  31109398 agagaaagtgtacttttgcggggtctacgtgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctat 31109488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 31953028 - 31953118
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctat 102  Q
    |||||||||||| |||||   | |||| |||| ||| |||||||||||| ||||||||||||  | |||||| ||||||||| ||||||||    
T  31953028 agagaaagtgtgtttgtgtgaggtccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctat 31953118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 22422053 - 22422119
Alignment:
Q  49 tgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataactct 115  Q
    ||||||| |||||| || ||||||| |||| |||| ||||||||| |||||||||||| || |||||    
T  22422053 tgtcagaattttgtatgagtgtcaagagatctattgccacctaaggatgtctatgtatcattactct 22422119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 32813349 - 32813244
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||| ||| | |||||| ||||||||| |||||||||||| ||||    
T  32813349 agagaaagtgtgcttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataa 32813250  T
Q  112 ctcttt 117  Q
    ||||||    
T  32813249 ctcttt 32813244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 5958998 - 5959104
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||| ||||||| || ||||||||||||| ||||||||||||||||||||||||| || |||||| |||| ||||  ||| ||||||| ||||    
T  5958998 agagaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagaggtgtattgccacttaagggtgtttatgtatcataa 5959097  T
Q  112 ctctttt 118  Q
    |||||||    
T  5959098 ctctttt 5959104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 27564733 - 27564827
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||    
T  27564733 agagaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtat 27564827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 47452318 - 47452412
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| |||||||  |||| |||||| |||||||||||||||||||||| | ||||||||||||||||  |||||||||||    
T  47452318 agagaaagtgtgcttgtgcgggatccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtat 47452412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 51898683 - 51898784
Alignment:
Q  14 agaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataact 113  Q
    ||||||||||||||||| |||||||  |||| ||||||||||||||||||||||||||||| | |||||| ||||||||  |||||||||||| || |||    
T  51898683 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattact 51898782  T
Q  114 ct 115  Q
    ||    
T  51898783 ct 51898784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 2582015 - 2581912
Alignment:
Q  14 agaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataact 113  Q
    ||||||||||||||||| || ||||  |||| ||||||||||||||||||||||||||||| | |||||| |||||||||  ||||||||||| || |||    
T  2582015 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattact 2581916  T
Q  114 cttt 117  Q
    ||||    
T  2581915 cttt 2581912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 37926436 - 37926539
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||| ||||| | |||||||| || ||||||||||||||||| ||||||||| |||||||||||| ||||||||  || ||||||||| ||||    
T  37926436 agagaaagtgtacttgtacgggatccatgtggccacgtgtcagatttttatgtgggtgttaaaagatgtattgccacctaaagatatctatgtatcataa 37926535  T
Q  112 ctct 115  Q
    ||||    
T  37926536 ctct 37926539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 8346386 - 8346492
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    |||||||||||||||||||||| ||||  |||| ||||||||||||||||||||||||||||| | |||||| ||||||||   || |||||||| || |    
T  8346386 agagaaagtgtgcttgtgcagggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaaggtgactatgtatcatta 8346485  T
Q  112 ctctttt 118  Q
    |||||||    
T  8346486 ctctttt 8346492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 43234 - 43140
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| |  ||||  |||| ||||||||||||||||||||||||||||| ||||||||  | ||||||| |||||||||||    
T  43234 agagaaagtgtgcttgtgcggagtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtctcctaagactgtctatgtat 43140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 9474874 - 9474968
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    |||||||||||| |||||| || ||||  |||| ||||||||||||||||||||||||||||| | |||||| |||||||||  |||||||||||    
T  9474874 agagaaagtgtgtttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtat 9474968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 44548374 - 44548468
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| || ||||  |||| ||||||||||||||||||||||| ||||| | |||||| ||||||||  ||||||||||||    
T  44548374 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtatcaaatggtgtattgccacctaaagatgtctatgtat 44548468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 50590998 - 50591100
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||| ||||||| || |||||||| |||| |||||||||||||||||||||||||  | |||||| |||||||||  ||| ||||||| ||||    
T  50590998 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 50591097  T
Q  112 ctc 114  Q
    |||    
T  50591098 ctc 50591100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 26440836 - 26440728
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||| ||| |||||||| || ||||||||||||||||||||||||||| ||| | ||||||  || ||||| |||||||| |||  |||    
T  26440836 agagaaagtgtgcttatgcgggatccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgtattgtcatctaaggatgtctatctatcctaa 26440737  T
Q  112 ctcttttaa 120  Q
    ||| |||||    
T  26440736 ctcatttaa 26440728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 37649297 - 37649193
Alignment:
Q  15 gaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataactc 114  Q
    |||||||||||||||| | || ||  ||||||||||||||||||||||||||||||||||   |||||| ||||||||  |||||||||||| || ||||    
T  37649297 gaaagtgtgcttgtgcggaattcacgtgaccacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaagatgtctatgtatcattactc 37649198  T
Q  115 tttta 119  Q
     ||||    
T  37649197 attta 37649193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 38632323 - 38632423
Alignment:
Q  16 aaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataactct 115  Q
    ||||||||||||||| || ||||  |||| ||||||||||||||||||||| ||| ||||| |||||| |||||||||  ||||||||||| || |||||    
T  38632323 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaaaggtgtattgccacctaagggtgtctatgtatcattactct 38632422  T
Q  116 t 116  Q
    |    
T  38632423 t 38632423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 49811525 - 49811629
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| |  || ||||| | ||||||||||||||||||||| ||||||| | ||||||  |||||||| |||||||| ||| ||||    
T  49811525 agagaaagtgtgcttgtgcggagtctatatggctacgtgtcagatttttgtgtggatgtcaaatggtgtattgtcacctaaggatgtctatctatcataa 49811624  T
Q  112 ctctt 116  Q
    |||||    
T  49811625 ctctt 49811629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 50630560 - 50630457
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| || ||||  |||| |||||||||||||||||||||||  |||| |||||||| |||||||||  | ||||||||| || |    
T  50630560 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtaacaaaggatgtattgccacctaagggtatctatgtatcatta 50630461  T
Q  112 ctct 115  Q
    ||||    
T  50630460 ctct 50630457  T

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Target: chr1; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 3000421 - 3000327
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||| | || ||||  |||| ||||||||||||||||||||||||||||| | |||||| |||||||||  ||| |||||||    
T  3000421 agagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtttatgtat 3000327  T

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Target: chr1; HSP #19
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 38595256 - 38595150
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||| | || ||||  |||| ||||||||||||||||||||||||||||| | |||||| ||||||||   ||| ||||||| || |    
T  38595256 agagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaaggtgtttatgtatcatta 38595157  T
Q  112 ctctttt 118  Q
    |||||||    
T  38595156 ctctttt 38595150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 41608491 - 41608593
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||| ||||| | || |||||||| |||| ||||||||||||||||| |||||||  | |||||| ||||||||| |||| ||||||| ||||    
T  41608491 agagaaagtgtacttgtacggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaaggatgtttatgtatcataa 41608590  T
Q  112 ctc 114  Q
    |||    
T  41608591 ctc 41608593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 48716284 - 48716374
Alignment:
Q  16 aaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||| || ||||  |||| ||||||||||||||||||||| ||||||| | |||||| |||||||||  |||||||||||    
T  48716284 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtat 48716374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 26274530 - 26274440
Alignment:
Q  16 aaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||| |||||||||||||||  |||| | ||||||||||||| ||||| ||||||| |||||||| |||| ||||  |||||||||||    
T  26274530 aaagtgtacttgtgcaggatccacgtgactatgtgtcagatttttctgtggatgtcaaatgatgtattgccacataagggtgtctatgtat 26274440  T

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Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 44454077 - 44453980
Alignment:
Q  16 aaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataact 113  Q
    ||||||||||||||  |||||||  | ||||| |||||||||||||||||||| |||| ||||||||| |||| |||   ||||||||||| ||||||    
T  44454077 aaagtgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtgtgggtatcaagagatgtattgccacttaaaggtgtctatgtatcataact 44453980  T

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Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 41758907 - 41758836
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtatt 83  Q
    |||||||||||| |||||| || ||||| |||| ||||||||||||||||||||| ||||||| | ||||||    
T  41758907 agagaaagtgtgtttgtgcggggtccatgtgactacgtgtcagatttttgtgtggttgtcaaagggtgtatt 41758836  T

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Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 45044558 - 45044662
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||| |||| |||||| || ||||| || | || |||||||||||||| ||||||||||| | |||||| ||||||||| |  | ||||||| ||||    
T  45044558 agagaaaatgtgtttgtgcggggtccatgtggctacatgtcagatttttgtatgggtgtcaaatggtgtattgccacctaaggaaatgtatgtatcataa 45044657  T
Q  112 ctctt 116  Q
    |||||    
T  45044658 ctctt 45044662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 11152378 - 11152457
Alignment:
Q  14 agaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaag 93  Q
    |||||| |||||||||| || || | ||||| ||||||||||||||||||||| |||| || | |||||| |||||||||    
T  11152378 agaaagcgtgcttgtgcggggtctacatgactacgtgtcagatttttgtgtggatgtcgaagggtgtattgccacctaag 11152457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 47748544 - 47748438
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||| | ||||||| ||||||||||| |||| |||||||||||| | |||||||| || | |||||| |||||||||  | | ||||||| ||||    
T  47748544 agagaaagtatacttgtgcgggatccatatggccacatgtcagatttttatatgggtgtc-aagggtgtattgccacctaagggtatttatgtatcataa 47748446  T
Q  112 ctctttta 119  Q
    ||| ||||    
T  47748445 ctcattta 47748438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 34340069 - 34340130
Alignment:
Q  44 ccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    |||||||||||||||||||||||   |||| || ||||||||||||||||| |||||||||||    
T  34340069 ccacgtgtcagatttttgtgtggca-tcaacaggtgtattaccacctaagagtgtctatgtat 34340130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 3302533 - 3302590
Alignment:
Q  14 agaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtc 71  Q
    |||||||||||||||   || |||||||||  ||||||||||||||||||||||||||    
T  3302533 agaaagtgtgcttgtatggggtccatatgattacgtgtcagatttttgtgtgggtgtc 3302590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 23597121 - 23597194
Alignment:
Q  44 ccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataactcttt 117  Q
    ||||||||||||||||| ||||||| |||||   |||||| ||||||||  |||||||||||| || |||||||    
T  23597121 ccacgtgtcagatttttatgtgggtatcaaagagtgtattgccacctaatgatgtctatgtatcattactcttt 23597194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 48489400 - 48489343
Alignment:
Q  14 agaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtc 71  Q
    ||||| ||||||||||| |||||||  ||||||| |||||||||||||||||| ||||    
T  48489400 agaaaatgtgcttgtgcgggatccacgtgaccacatgtcagatttttgtgtggatgtc 48489343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 13414863 - 13414792
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtatt 83  Q
    ||||||| ||||||||||  || ||||  |||| |||||| |||||||||||||||||||||| | ||||||    
T  13414863 agagaaaatgtgcttgtgtggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtatt 13414792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 44332369 - 44332440
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtatt 83  Q
    ||||||||| | ||||||| || |||||| | |||| |||||||||||| |||||||||||| |||| ||||    
T  44332369 agagaaagtatacttgtgcggggtccatagggccacatgtcagatttttatgtgggtgtcaagagatatatt 44332440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 6260970 - 6260870
Alignment:
Q  14 agaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataact 113  Q
    ||||| ||||||| ||| || ||||  ||||||| ||| |||||||| |||||||||  |  | |||||||||||||||| || ||||| ||| ||||||    
T  6260970 agaaaatgtgcttatgcggggtccacgtgaccacatgttagatttttatgtgggtgttcaggggtgtattaccacctaaggatatctatctatcataact 6260871  T
Q  114 c 114  Q
    |    
T  6260870 c 6260870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 11347920 - 11348028
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||| |||||| ||||| || ||||||||||||||||||||||| ||||||| ||||||||  |||||||| |||||||||||| ||||    
T  11347920 agagaaagtgtgcttatgcagggtccatgtggccacgtgtcagatttttgtgtggatgtcaaaggatgtattgtcacctaaggatgtctatgtatcataa 11348019  T
Q  112 ctcttttaa 120  Q
    |||||||||    
T  11348020 ctcttttaa 11348028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 26141530 - 26141632
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||  || ||||| |||||||||||||||||||||||||||||| ||| | |||||| ||||||||| |||||||||||| ||||    
T  26141530 agagaaagtgtgcttgtgtggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataa 26141629  T
Q  112 ctc 114  Q
    |||    
T  26141630 ctc 26141632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 27714889 - 27714993
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| || |||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||||   ||||||||||| || |    
T  27714889 agagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaaggtgtctatgtatcatta 27714988  T
Q  112 ctctt 116  Q
    |||||    
T  27714989 ctctt 27714993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 41189762 - 41189866
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| || ||||| || |||||||||| |||||| ||||||||||||| |||||||| ||||||||| |||| ||||||| ||||    
T  41189762 agagaaagtgtgcttgtgcggggtccatgtggccacgtgtcaaatttttatgtgggtgtcaaatgatgtattgccacctaaggatgtatatgtatcataa 41189861  T
Q  112 ctctt 116  Q
    |||||    
T  41189862 ctctt 41189866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 49607516 - 49607410
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||  |||||||  |||| ||||||||||||||||||||||||||||| | |||||| |||||||||  ||||||||||| || |    
T  49607516 agagaaagtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 49607417  T
Q  112 ctctttt 118  Q
    |||||||    
T  49607416 ctctttt 49607410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 20764913 - 20765015
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||| | || ||||| || ||||||||||||||||||||||||||| |||   |||||||||||||||| |||||||||| | ||||    
T  20764913 agagaaagtgtgcttgtacggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaaggatgtctatgtctcataa 20765012  T
Q  112 ctc 114  Q
    |||    
T  20765013 ctc 20765015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 47531967 - 47531865
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| || | |||||| |||||||||||||| |||||||| ||| ||||| |||||| ||| ||||| |||||||||||| ||||    
T  47531967 agagaaagtgtgcttgtgcggggttcatatggccacgtgtcagattcttgtgtggatgttaaaaggtgtattgccatctaaggatgtctatgtatcataa 47531868  T
Q  112 ctc 114  Q
    |||    
T  47531867 ctc 47531865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 51419358 - 51419460
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| || || || || ||||||||||||||||||||||||||| ||| ||||||||  || ||||| |||||||||||| ||||    
T  51419358 agagaaagtgtgcttgtgcggggtctatgtggccacgtgtcagatttttgtgtgggtgttaaaggatgtattgtcatctaaggatgtctatgtatcataa 51419457  T
Q  112 ctc 114  Q
    |||    
T  51419458 ctc 51419460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 53982113 - 53982019
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| || ||||  |||| ||||||||||||||||||||||||||||| | |||||| |||||||||  |||||||||||    
T  53982113 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtat 53982019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 54868893 - 54868997
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    |||||||||||| |||||| || ||||  | || ||||||||||||||||||||||||||||||| |||||| |||||||||  ||||||||||| || |    
T  54868893 agagaaagtgtgattgtgcggggtccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcatta 54868992  T
Q  112 ctctt 116  Q
    |||||    
T  54868993 ctctt 54868997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 31456791 - 31456697
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| || |||| ||||| ||||||||||||||||||||||||||||| | |||||| || |||| |  |||||||||||    
T  31456791 agagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccgcctatgggtgtctatgtat 31456697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 33644302 - 33644208
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| || ||||  |||| ||||||||||||||||||||||||||||| | |||||| ||||| |||  |||||||||||    
T  33644302 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacccaagggtgtctatgtat 33644208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 52629402 - 52629308
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||| | || ||||  |||| ||||||||||||||||||||||||||||| | |||||| |||||||||  |||||||||||    
T  52629402 agagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtat 52629308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 8956864 - 8956761
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    |||| ||||||||||||| | | |||| |||| ||||||||| |||||| ||||||||||||| |||||||| |||| |||| |||||||||||| || |    
T  8956864 agaggaagtgtgcttgtgtaaggtccacatgaacacgtgtcacatttttatgtgggtgtcaaaggatgtattgccacataaggatgtctatgtatcatta 8956765  T
Q  112 ctct 115  Q
    ||||    
T  8956764 ctct 8956761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 17470507 - 17470404
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||  || ||||  |||| ||||||||||||||||||||||||| ||||| |||||| ||||||||   ||||||||||| || |    
T  17470507 agagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccacctaaaggtgtctatgtatcatta 17470408  T
Q  112 ctct 115  Q
    ||||    
T  17470407 ctct 17470404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 24699952 - 24700055
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    |||||||||||| |||| |||| ||||  || ||||||| ||||||||| ||||||||||||||| |||||| ||| ||||| |||||||||||| || |    
T  24699952 agagaaagtgtgtttgtacagggtccacgtggccacgtgccagatttttatgtgggtgtcaaaaggtgtattgccaactaaggatgtctatgtatcatta 24700051  T
Q  112 ctct 115  Q
    ||||    
T  24700052 ctct 24700055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 35536728 - 35536625
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    |||| ||||||||||||| | | |||| |||||||||||||| |||||| ||||||||||||| | |||||| |||| |||| |||||||||||| || |    
T  35536728 agaggaagtgtgcttgtgtaaggtccacatgaccacgtgtcacatttttatgtgggtgtcaaatggtgtattgccacataaggatgtctatgtatcatta 35536629  T
Q  112 ctct 115  Q
    ||||    
T  35536628 ctct 35536625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 33118849 - 33118953
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    |||||||||||| || ||  |||||||  |||| |||||||| |||||||||||||||||||| | ||||||  ||||||||  ||||||||||| ||||    
T  33118849 agagaaagtgtgtttctgagggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcataa 33118948  T
Q  112 ctctt 116  Q
    |||||    
T  33118949 ctctt 33118953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 116
Target Start/End: Original strand, 11095380 - 11095455
Alignment:
Q  41 tgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataactctt 116  Q
    |||| ||||||||||||||||||||||||||||| | |||||| |||||||||  ||||||||||| || ||||||    
T  11095380 tgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 11095455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 26754797 - 26754706
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatg 103  Q
    ||||||| ||||||||||| || ||||| ||||||| |||||||||||||||||| |||| || | |||||| |||||||||  ||||||||    
T  26754797 agagaaaatgtgcttgtgcggggtccatgtgaccacatgtcagatttttgtgtggatgtccaagggtgtattgccacctaagggtgtctatg 26754706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 35965780 - 35965876
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    |||||||||||||||||||||||||||        |||||||||||||| ||||||||||||| ||||||||| ||| |||| |||| ||||||| || |    
T  35965780 agagaaagtgtgcttgtgcaggatcca--------cgtgtcagatttttatgtgggtgtcaaaggatgtattatcacttaaggatgtatatgtatcatta 35965871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 8076495 - 8076401
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| || ||||  |||| |||||| |||||||||||||||||||||| | |||| | |||||||||  ||| |||||||    
T  8076495 agagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaagggtgtttatgtat 8076401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 14623837 - 14623931
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||   | |||| |||| ||| |||||||||||| ||||||||||||  | |||||| ||||||||| ||||||||||||    
T  14623837 agagaaagtgtgcttgtgtgaggtccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatgtat 14623931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 30801731 - 30801825
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||| ||||||||||  || |||||||||| || ||||| |||||||||||||| ||||| | ||||||| ||||||||  |||||||||||    
T  30801731 agagaaaatgtgcttgtgtggggtccatatgactacatgtcatatttttgtgtgggtatcaaagggtgtattatcacctaagggtgtctatgtat 30801825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 48587089 - 48587183
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||| ||||||| |||||||  |||| ||||||||||||||| ||| ||||||||| | |||||| |||||||||  | |||||||||    
T  48587089 agagaaagtgtacttgtgcgggatccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtatctatgtat 48587183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 36331327 - 36331388
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaa 73  Q
    ||||||||||| ||||||| || |||||||| |||| |||||||||||||||||||||||||    
T  36331327 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaa 36331388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 11907473 - 11907369
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||| ||||||||||| || ||||||||||||| ||||||||||||||||| ||||  |    ||||||  ||||||||  ||||||||||| ||||    
T  11907473 agagaaaatgtgcttgtgcggggtccatatgaccacatgtcagatttttgtgtgagtgttcaggtgtgtattgtcacctaagggtgtctatgtatcataa 11907374  T
Q  112 ctctt 116  Q
    |||||    
T  11907373 ctctt 11907369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 13898053 - 13898139
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgt 98  Q
    ||||||||||||||||||   | |||| |||| |||||||||||||||| ||||||||||||  | |||||| ||||||||| ||||    
T  13898053 agagaaagtgtgcttgtgtgaggtccacatgaacacgtgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgt 13898139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 9563101 - 9563030
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtatt 83  Q
    |||||||||||| ||||||||||||||  |||| ||||||||||||||| | ||| ||||||| | ||||||    
T  9563101 agagaaagtgtgtttgtgcaggatccacgtgactacgtgtcagatttttatatggatgtcaaaggttgtatt 9563030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 25407145 - 25407207
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcaga-tttttgtgtgggtgtcaa 73  Q
    |||||||||||| |||||  |||||||||||| ||||||||||| |||||||||| |||||||    
T  25407145 agagaaagtgtgtttgtgtgggatccatatgatcacgtgtcagattttttgtgtgtgtgtcaa 25407207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 45058551 - 45058652
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||| | ||||||| || ||||||||  ||| |||||||||||| |||||||||| || | |||||| |||||||||  ||| ||||||| ||||    
T  45058551 agagaaagtatacttgtgcggggtccatatggtcacatgtcagatttttatgtgggtgtc-aagggtgtattgccacctaagggtgtttatgtatcataa 45058649  T
Q  112 ctc 114  Q
    |||    
T  45058650 ctc 45058652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 42823213 - 42823137
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccac 88  Q
    ||||||||| | ||| ||| || ||||||||||||| ||||| |||||| ||||||||||||  | |||||||||||    
T  42823213 agagaaagtatacttatgcggggtccatatgaccacatgtcaaatttttttgtgggtgtcaaggggtgtattaccac 42823137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 46472372 - 46472428
Alignment:
Q  119 aaaatcattccgtttaagaacctacgttggttgaatggttcaaaagatacatgatgc 175  Q
    ||||||||||||||| |||| | |  ||||||||||||||||||||||| |||||||    
T  46472372 aaaatcattccgtttgagaagcaatattggttgaatggttcaaaagatagatgatgc 46472428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 117
Target Start/End: Original strand, 36707456 - 36707527
Alignment:
Q  46 acgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataactcttt 117  Q
    ||||||||||||||||||||| ||||||| | ||||||  ||||||||  | ||||||||| || |||||||    
T  36707456 acgtgtcagatttttgtgtggatgtcaaagggtgtattgtcacctaagggtatctatgtatcattactcttt 36707527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 35093659 - 35093583
Alignment:
Q  40 atgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataactctt 116  Q
    |||||||| ||||||||||||| |||| ||||||| | ||||||  |||||||   |||||||||||  ||||||||    
T  35093659 atgaccacatgtcagatttttgcgtggatgtcaaatgttgtattgtcacctaaagttgtctatgtatcgtaactctt 35093583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 42257295 - 42257188
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| || ||||| || ||||||||||||||||| ||||||||||||| |||||||| ||||||||  |||||||||||| ||||    
T  42257295 agagaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttatgtgggtgtcaaatgatgtattgccacctaaagatgtctatgtatcataa 42257196  T
Q  112 ctctttta 119  Q
    ||||||||    
T  42257195 ctctttta 42257188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 40613900 - 40614002
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||||| | |||||| ||||||||| |||||||||||| ||||    
T  40613900 agagaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataa 40613999  T
Q  112 ctc 114  Q
    |||    
T  40614000 ctc 40614002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 9058582 - 9058478
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| || |||| ||||| ||||||||||||||||||||||||||||| | |||||| |||||||||  ||||||||||| || |    
T  9058582 agagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 9058483  T
Q  112 ctctt 116  Q
    |||||    
T  9058482 ctctt 9058478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 38273140 - 38273248
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    |||||||||||||| |||| || ||||| || | ||||||||||||||||||||||||| ||| | |||||| ||| |||||||||||||||||| ||||    
T  38273140 agagaaagtgtgctagtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgttaaagggtgtattgccatctaagaatgtctatgtatcataa 38273239  T
Q  112 ctcttttaa 120  Q
    |||||||||    
T  38273240 ctcttttaa 38273248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 5574486 - 5574589
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| |||||||  |||| ||||||||||||||| ||||||||||||| | |||||| |||||||||| ||||||||||| || |    
T  5574486 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcatta 5574585  T
Q  112 ctct 115  Q
    ||||    
T  5574586 ctct 5574589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 45097733 - 45097839
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||| ||||||| || |||||||| |||| |||||||||||||| ||||||||||  |||||||| ||||||||| |||| ||||||| ||||    
T  45097733 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtatgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataa 45097832  T
Q  112 ctctttt 118  Q
    |||||||    
T  45097833 ctctttt 45097839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 10249380 - 10249484
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| || ||||  |||| ||||||||||||||||||||||||||||||| ||||||  ||||||||  ||||||||||| || |    
T  10249380 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcatta 10249479  T
Q  112 ctctt 116  Q
    |||||    
T  10249480 ctctt 10249484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 33436098 - 33436205
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| || ||||  |||| |||||| |||||||||||||||||||||| | |||||| |||||||||  ||||||||||| || |    
T  33436098 agagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 33436197  T
Q  112 ctctttta 119  Q
    ||||||||    
T  33436198 ctctttta 33436205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 13438445 - 13438351
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| || ||||  |||| ||||||||||||||||||||||||||||| ||||||||  ||||||||  |||||||||||    
T  13438445 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtcacctaagggtgtctatgtat 13438351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 17473122 - 17473028
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| |||||||  |||| ||||||||||||||||||||||||||||| | |||||| ||| |||||  |||||||||||    
T  17473122 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtat 17473028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 28381653 - 28381747
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| |  ||||| |||| |||||||||||||||||||||||||| |||| |||||| |||||||||  |||||||||||    
T  28381653 agagaaagtgtgcttgtgcggagtccatgtgactacgtgtcagatttttgtgtgggtgtcgaaaggtgtattgccacctaagggtgtctatgtat 28381747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 28863557 - 28863463
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| || ||||  |||| ||||||||||||||||||||||||||||| | |||||| |||||||||  |||||||||||    
T  28863557 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtat 28863463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 32505648 - 32505749
Alignment:
Q  14 agaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataact 113  Q
    ||||||||||||||||| || ||||  |||| ||||||||||||||||||||||||||||||| ||||||  ||||||||  ||||||||||| || |||    
T  32505648 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattact 32505747  T
Q  114 ct 115  Q
    ||    
T  32505748 ct 32505749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 33436313 - 33436210
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||||   |||| |||  |||||||||||||||| ||||||||||||||| |||||| ||| ||||| |||||||||||| || |    
T  33436313 agagaaagtgtgcttgtgcaaagtccacatggtcacgtgtcagatttttatgtgggtgtcaaaaggtgtattgccatctaaggatgtctatgtatcatta 33436214  T
Q  112 ctct 115  Q
    ||||    
T  33436213 ctct 33436210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 19930818 - 19930912
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    |||||||||||| |||||| || |||| ||||| ||||||||||||||||||||| ||||||| | |||||| |||||||||  |||||||||||    
T  19930818 agagaaagtgtgtttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctatgtat 19930912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 38732456 - 38732354
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||| ||||||| || ||||||||||||| |||||||||||||||||||||||||  ||||||||  ||| ||||  ||| ||||||| ||||    
T  38732456 agagaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagggatgtattgtcacataagggtgtttatgtatcataa 38732357  T
Q  112 ctc 114  Q
    |||    
T  38732356 ctc 38732354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 40701580 - 40701486
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    |||||||||||| |||||| || ||||  | || ||||||||||||||||||||||||||||||| |||||| |||||||||  |||||||||||    
T  40701580 agagaaagtgtgattgtgcggggtccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtat 40701486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 2533221 - 2533123
Alignment:
Q  16 aaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataactct 115  Q
    ||||||||||||||| || || || || | ||||||||||||||||||||| ||||||| |||||||| |||| |||| |||||||||||| ||||||||    
T  2533221 aaagtgtgcttgtgcggggtctatgtggctacgtgtcagatttttgtgtgg-tgtcaaaggatgtattgccacttaaggatgtctatgtatcataactct 2533123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 7465733 - 7465836
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||  || ||||  |||| ||||||||||||||||||||||||||||| | |||||| ||| |||||  ||||||||||| || |    
T  7465733 agagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcatta 7465832  T
Q  112 ctct 115  Q
    ||||    
T  7465833 ctct 7465836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 20700917 - 20700810
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||| ||| || ||||  |||| ||||||||||||||||||| || |||||| | |||||| |||| |||| |||||||||||| || |    
T  20700917 agagaaagtgtgcttatgcggggtccacgtgactacgtgtcagatttttgtgtaggagtcaaagggtgtattgccacataaggatgtctatgtatcatta 20700818  T
Q  112 ctctttta 119  Q
    ||||||||    
T  20700817 ctctttta 20700810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 36168938 - 36168835
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||| ||||||||| || ||||| || |||||||||| ||||||||||||| || ||| ||||||||  || ||||| |||||||||||| ||||    
T  36168938 agagaaagtatgcttgtgcggggtccatgtggccacgtgtcaaatttttgtgtgggagttaaaggatgtattgtcatctaaggatgtctatgtatcataa 36168839  T
Q  112 ctct 115  Q
    ||||    
T  36168838 ctct 36168835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 2997485 - 2997566
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaag 93  Q
    ||||||||||| ||||||| || |||||||| |||| |||||||||||||||||||||||||  | |||||| |||||||||    
T  2997485 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaag 2997566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 4060785 - 4060693
Alignment:
Q  14 agaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||| ||| |||||||  | || ||||||||||||||||||||| ||||||||| ||||||  ||||||||  |||||||||||    
T  4060785 agaaagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtggatgtcaaaaggtgtattgtcacctaagggtgtctatgtat 4060693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 30915565 - 30915461
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||| | || ||||  |||| ||||||||||||||| |||||| |||||| | |||||| |||||||||  ||||||||||| || |    
T  30915565 agagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttatgtgggggtcaaagggtgtattgccacctaagggtgtctatgtatcatta 30915466  T
Q  112 ctctt 116  Q
    |||||    
T  30915465 ctctt 30915461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 41575240 - 41575145
Alignment:
Q  12 agagaaagtgtgcttgtgcagga-tccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    |||||||||||||||||| |||  |||| |||||||| ||||| |||||||||||  ||||||| | |||||||||| ||||| ||||||||||||    
T  41575240 agagaaagtgtgcttgtgtaggggtccacatgaccacatgtcaaatttttgtgtgaatgtcaaagggtgtattaccatctaaggatgtctatgtat 41575145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 43490219 - 43490121
Alignment:
Q  16 aaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataactc 114  Q
    ||||||| ||||||| || |||||||| |||| |||||||||||||||||||||||||  | ||||||  ||||||||  ||| ||||||| |||||||    
T  43490219 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgtcacctaagggtgtttatgtatcataactc 43490121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 27864806 - 27864712
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||| ||| || ||||  |||  ||||||||||||||||||||| ||||||| | |||||| |||| ||||  |||||||||||    
T  27864806 agagaaagtgtgcttttgcggggtccacgtgattacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacataagggtgtctatgtat 27864712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 3738043 - 3737986
Alignment:
Q  14 agaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtc 71  Q
    ||||| ||||||||||| || |||| |||||||| |||||||||||||||||||||||    
T  3738043 agaaaatgtgcttgtgcggggtccacatgaccacatgtcagatttttgtgtgggtgtc 3737986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 13365455 - 13365394
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaa 73  Q
    ||||||||||| ||||||| || ||||||||  ||| |||||||||||||||||||||||||    
T  13365455 agagaaagtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaa 13365394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 26891502 - 26891607
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||| ||||||||| |  | ||||  ||||||| ||||||||||||||||||||||| |  | |||||| |||||||||  || |||||||| ||||    
T  26891502 agagaaaatgtgcttgttcgaggtccacgtgaccacatgtcagatttttgtgtgggtgtctaggggtgtattgccacctaagggtggctatgtatcataa 26891601  T
Q  112 ctcttt 117  Q
    ||||||    
T  26891602 ctcttt 26891607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 41758653 - 41758587
Alignment:
Q  46 acgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataac 112  Q
    ||||||||||||||| | | ||||||||||| | ||||||||||||| |||||| |||||| |||||    
T  41758653 acgtgtcagatttttatataggtgtcaaaaggtatattaccacctaaaaatgtccatgtattataac 41758587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 3034981 - 3035033
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgt 64  Q
    ||||||||| | ||||||| || ||||||||||||| ||||||||||||||||    
T  3034981 agagaaagtatacttgtgcggggtccatatgaccacatgtcagatttttgtgt 3035033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 3154245 - 3154193
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgt 64  Q
    ||||||| |||| ||| || |||||||| ||||||||||||||||||||||||    
T  3154245 agagaaactgtgtttgggcgggatccatgtgaccacgtgtcagatttttgtgt 3154193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 38882841 - 38882916
Alignment:
Q  41 tgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataactcttt 117  Q
    |||| ||||||||||||||||||||| ||||||| | | |||| |||||||||  ||||||||||| || |||||||    
T  38882841 tgactacgtgtcagatttttgtgtggatgtcaaagggt-tattgccacctaagggtgtctatgtatcattactcttt 38882916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 17820033 - 17820104
Alignment:
Q  43 accacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataactc 114  Q
    ||||| |||||||||||||||||||||||||  | |||||| |||||||    ||||||||||| |||||||    
T  17820033 accacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctatagttgtctatgtatcataactc 17820104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 17823852 - 17823782
Alignment:
Q  46 acgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataactctt 116  Q
    |||||||||||||||||||||||||  |   ||||||| ||||||||| |||| ||||||| || ||||||    
T  17823852 acgtgtcagatttttgtgtgggtgttcaggaatgtattgccacctaaggatgtatatgtatcattactctt 17823782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 3784097 - 3784003
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| |||||||  |||| |||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||    
T  3784097 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtat 3784003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 35522978 - 35522877
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| | |||||| |||| |||| |||||||||||| ||||    
T  35522978 agagaaagtgtgcttgtgcgggatccatatggccacgtgtcagatttttgtgtgggtgttaaatggtgtattgccacttaaggatgtctatgtatcataa 35522879  T
Q  112 ct 113  Q
    ||    
T  35522878 ct 35522877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 19436185 - 19436289
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||| ||| |||||||  |||| ||||||||||||||||||||||||||||||| ||||||  |||||||| |||||||||||| || |    
T  19436185 agagaaagtgtgcttatgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaaggatgtctatgtatcatta 19436284  T
Q  112 ctctt 116  Q
    |||||    
T  19436285 ctctt 19436289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 3434664 - 3434561
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| |||||||  |||| ||||||||| ||||||||||||||||||| | |||||| ||||||||| |||||||||||| || |    
T  3434664 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagttttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcatta 3434565  T
Q  112 ctct 115  Q
    ||||    
T  3434564 ctct 3434561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 36362128 - 36362025
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||  || ||||  |||| ||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||| || |    
T  36362128 agagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattaccacctaagggtgtctatgtatcatta 36362029  T
Q  112 ctct 115  Q
    ||||    
T  36362028 ctct 36362025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 19329944 - 19329850
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||    
T  19329944 agagaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtat 19329850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 36208275 - 36208171
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||| |||||||||||||| ||||  ||||||| |||||| ||||||||||||||||||   |||||||||||||||||  ||||||||||| ||||    
T  36208275 agagaaaatgtgcttgtgcagggtccacgtgaccacatgtcagctttttgtgtgggtgtcaatgaatgtattaccacctaagggtgtctatgtatcataa 36208176  T
Q  112 ctctt 116  Q
    |||||    
T  36208175 ctctt 36208171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 36361911 - 36362014
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||  || ||||  |||| ||||||||||||||||||||||||||||| |||||||| |||||||||  ||||||||||| || |    
T  36361911 agagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagggtgtctatgtatcatta 36362010  T
Q  112 ctct 115  Q
    ||||    
T  36362011 ctct 36362014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 3694469 - 3694388
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaag 93  Q
    ||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||| ||||| ||||||  ||||||||    
T  3694469 agagaaagtgtgcttgtgcgggatccacatgactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgtcacctaag 3694388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 40957809 - 40957704
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||| | |||||||  |||| ||||||||||||||||||||||| |||||   |||||| |||||||||| ||||||||||| || |    
T  40957809 agagaaagtgtgcttgtacgggatccacgtgactacgtgtcagatttttgtgtgggtatcaaagagtgtattgccacctaagagtgtctatgtatcatta 40957710  T
Q  112 ctcttt 117  Q
    ||||||    
T  40957709 ctcttt 40957704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 7389491 - 7389387
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| || ||||  |||| |||||||||||||||||||||||||||||   |||||| |||||||||  ||||||||||| || |    
T  7389491 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaagggtgtctatgtatcatta 7389392  T
Q  112 ctctt 116  Q
    |||||    
T  7389391 ctctt 7389387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 7728006 - 7727902
Alignment:
Q  14 agaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataact 113  Q
    ||||||||| ||||||| || ||||||||||||| |||||||||||| ||||  |||||| || ||||||||||||||||  ||| ||||||| ||||||    
T  7728006 agaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttatgtgaatgtcaagaggtgtattaccacctaagggtgtttatgtatcataact 7727907  T
Q  114 ctttt 118  Q
    |||||    
T  7727906 ctttt 7727902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 32564424 - 32564526
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    |||||||||||  |||||| || |||||||  |||| |||||||||||||||||||||||||  | |||||| |||||||||||||| ||||||| ||||    
T  32564424 agagaaagtgtatttgtgcggggtccatatagccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagaatgtttatgtatcataa 32564523  T
Q  112 ctc 114  Q
    |||    
T  32564524 ctc 32564526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 122
Target Start/End: Complemental strand, 41915843 - 41915733
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||| ||||||| || |||||||| |||| |||||||||||||||| ||||||||  | |||||| |||||||||  ||| ||||||| ||||    
T  41915843 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtaggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 41915744  T
Q  112 ctcttttaaaa 122  Q
    |||| ||||||    
T  41915743 ctctattaaaa 41915733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 46374808 - 46374902
Alignment:
Q  20 tgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataactc 114  Q
    ||||||||||| || ||||| || ||||||||||||||||||||||||||| ||| | ||| || ||||||||| |||||||||||| |||||||    
T  46374808 tgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgtgttgccacctaaggatgtctatgtatcataactc 46374902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 8080381 - 8080485
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| || ||||  |||| ||||||||||||||| ||| ||||||||| | |||||| |||||||||  ||||||||||| || |    
T  8080381 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 8080480  T
Q  112 ctctt 116  Q
    |||||    
T  8080481 ctctt 8080485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 122
Target Start/End: Complemental strand, 8238315 - 8238203
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccaccta-agaatgtctatgtataata 110  Q
    ||||||||||| ||||||| || |||||||||| || |||||||||||||||||||||||||| | |||||| ||||||| ||  ||| ||||||| |||    
T  8238315 agagaaagtgtacttgtgcggggtccatatgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctacagggtgtttatgtatcata 8238216  T
Q  111 actc-ttttaaaa 122  Q
    |||| ||||||||    
T  8238215 actcattttaaaa 8238203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 22343463 - 22343360
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||| ||||||| || ||||||||  ||| |||||||||||||||||||||||||  | |||||| |||||||||  ||| ||||||| ||||    
T  22343463 agagaaagtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 22343364  T
Q  112 ctct 115  Q
    ||||    
T  22343363 ctct 22343360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 46033799 - 46033902
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||| | ||||||||| |  | ||| |||||||||||||||||||| ||||||||| ||| | |||||| |||||||||||| ||||||||| ||||    
T  46033799 agagaaaatatgcttgtgcggagttcatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaagaatatctatgtatcataa 46033898  T
Q  112 ctct 115  Q
    ||||    
T  46033899 ctct 46033902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 4999512 - 4999606
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    |||||||||||| |||||| || ||||  |||| |||| |||||||||||||||||||||||||| |||||| ||| |||||  |||||||||||    
T  4999512 agagaaagtgtgtttgtgcggggtccacgtgactacgtatcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtat 4999606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 35468853 - 35468959
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    |||||||||||| ||||||||| |||| |||  ||| | | |||||||| ||||||||||||| |||||||| ||| ||||| |||||||||||| || |    
T  35468853 agagaaagtgtgtttgtgcagggtccacatggtcacatattagatttttatgtgggtgtcaaatgatgtattgccatctaaggatgtctatgtatcatta 35468952  T
Q  112 ctctttt 118  Q
    |||||||    
T  35468953 ctctttt 35468959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 38267142 - 38267048
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| || ||||  |||| ||||||||||||||||||||||||||||| | ||||||  ||| ||||  |||||||||||    
T  38267142 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacataagggtgtctatgtat 38267048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 38837319 - 38837213
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| || ||||  |||| ||||||||||||||||||| |||||  || | |||||| |||||||||  ||||||||||| || |    
T  38837319 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtaggtgtacaagggtgtattgccacctaagggtgtctatgtatcatta 38837220  T
Q  112 ctctttt 118  Q
    |||||||    
T  38837219 ctctttt 38837213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 38044299 - 38044195
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||| ||||||| || |||||||| | || |||||||||||||||||| ||||||  | |||||| |||||||||  ||| ||||||| ||||    
T  38044299 agagaaagtgtacttgtgcggggtccatatggctacatgtcagatttttgtgtggatgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 38044200  T
Q  112 ctctt 116  Q
    |||||    
T  38044199 ctctt 38044195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 18207250 - 18207176
Alignment:
Q  44 ccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataactctttt 118  Q
    |||||||| |||||||||| |||||||||| || |||||| |||||||||  ||||||||||| |||||||||||    
T  18207250 ccacgtgttagatttttgtatgggtgtcaagaggtgtattgccacctaaggttgtctatgtatcataactctttt 18207176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 21234503 - 21234401
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||| ||||||||||| || | ||| || | |||||||| ||||||||||| |||||||| | ||||||  |||||||| |||||||||||| ||||    
T  21234503 agagaaaatgtgcttgtgcggggtacatgtggctacgtgtcaaatttttgtgtgagtgtcaaagggtgtattgtcacctaaggatgtctatgtatcataa 21234404  T
Q  112 ctc 114  Q
    |||    
T  21234403 ctc 21234401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 32951491 - 32951585
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| || ||||  |||| |||||| |||||||||||||| ||| ||| ||||||||  || |||||| |||||||||||    
T  32951491 agagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtggatgttaaaggatgtattgtcatctaagagtgtctatgtat 32951585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 35137635 - 35137545
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctat 102  Q
    |||||||||||| |||||| || ||||  |||| |||||| |||||||||||||||||||||| | |||||| |||||||||  |||||||    
T  35137635 agagaaagtgtgtttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctat 35137545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 26296746 - 26296643
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||| || |||||||| || |||||||| |||||| |||||||||| ||||| ||| ||| | | ||||  |||||||| |||||||||||| ||||    
T  26296746 agagaaaatgcgcttgtgcggggtccatatggccacgtatcagatttttatgtggatgttaaagggtatattgtcacctaaggatgtctatgtatcataa 26296647  T
Q  112 ctct 115  Q
    ||||    
T  26296646 ctct 26296643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 40846111 - 40846218
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    |||||||||||  |||||| || ||||||| || || ||| |||||||||||||| ||||||  | |||||| ||||||||| |||| ||||||| ||||    
T  40846111 agagaaagtgtatttgtgcggggtccatataactacatgttagatttttgtgtggatgtcaaggggtgtattgccacctaaggatgtttatgtatcataa 40846210  T
Q  112 ctctttta 119  Q
    ||| ||||    
T  40846211 ctccttta 40846218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 41423784 - 41423682
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||| | ||||||| | ||||| |  ||||||| ||||||||||||||||  ||||||| || |||||||||| ||||  |||||||||||| ||||    
T  41423784 agagaaaatatgcttgtacgggatctacgtgaccacatgtcagatttttgtgtaagtgtcaagaggtgtattaccatctaatgatgtctatgtatcataa 41423685  T
Q  112 ctc 114  Q
    |||    
T  41423684 ctc 41423682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 117
Target Start/End: Original strand, 10343597 - 10343666
Alignment:
Q  48 gtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataactcttt 117  Q
    |||||||||||||||||||||||||| |  |||||| |||||||||  ||||||||||| || |||||||    
T  10343597 gtgtcagatttttgtgtgggtgtcaagatgtgtatttccacctaagggtgtctatgtatcattactcttt 10343666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 31735979 - 31735884
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| |||||||| || ||||||||       |||||||||||| |||   |||||| ||||||||| |||||||||||| ||||    
T  31735979 agagaaagtgtgcttgtgcgggatccatgtggccacgtgt-------ttgtgtgggtgttaaagagtgtattgccacctaaggatgtctatgtatcataa 31735887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 16374822 - 16374893
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtatt 83  Q
    |||||| |||||||||||   ||||||  |||||||||||||||||||||||||| ||||||  ||||||||    
T  16374822 agagaatgtgtgcttgtgtgagatccacgtgaccacgtgtcagatttttgtgtggatgtcaagggatgtatt 16374893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 39255953 - 39256023
Alignment:
Q  44 ccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataactc 114  Q
    ||||||||||||||||||| ||||| ||||  | |||||| |||||||||  ||||||||||| |||||||    
T  39255953 ccacgtgtcagatttttgtatgggtatcaagtggtgtattgccacctaaggttgtctatgtatcataactc 39256023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 12310998 - 12310905
Alignment:
Q  20 tgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataactct 115  Q
    ||||||||| |||||||||  ||||||| |||||||||||||| ||| | ||   |||| |||| |||||||||  ||||||||||| ||||||||    
T  12310998 tgtgcttgttcaggatccacgtgaccacatgtcagatttttgtatggatatc--cagatatatttccacctaagggtgtctatgtatcataactct 12310905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 11044237 - 11044185
Alignment:
Q  65 gggtgtcaaaagatgtattaccacctaagaatgtctatgtataataactcttt 117  Q
    |||||||||| |||||||| |||||||||  ||||||||||| || |||||||    
T  11044237 gggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactcttt 11044185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 28177877 - 28177775
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    |||||||||||| |||||| || ||||| |||||||||||||||||||||||||||||||||| | |||||| ||||||||| |||||||||||| ||||    
T  28177877 agagaaagtgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataa 28177778  T
Q  112 ctc 114  Q
    |||    
T  28177777 ctc 28177775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 2740376 - 2740273
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| |||||||  |||| ||||||||||||||||||||||||||||| | |||||| ||||||||| |||||||||||| || |    
T  2740376 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcatta 2740277  T
Q  112 ctct 115  Q
    ||||    
T  2740276 ctct 2740273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 6679800 - 6679697
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||| |||| |||||| || ||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||  |||||||||||| ||||    
T  6679800 agagaaaatgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaagatgtctatgtatcataa 6679701  T
Q  112 ctct 115  Q
    ||||    
T  6679700 ctct 6679697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 13811754 - 13811660
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| || ||||  |||| ||||||||||||||||||||||||||||| |||||||| |||||||||  |||||||||||    
T  13811754 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtat 13811660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 26720618 - 26720516
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| |||||||| || ||||||||||||||||| ||| ||||| ||| | |||||| ||||||||| |||||||||||| ||||    
T  26720618 agagaaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataa 26720519  T
Q  112 ctc 114  Q
    |||    
T  26720518 ctc 26720516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 26990367 - 26990265
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| |||||||| || ||||||||||||||||| ||| ||||| ||| | |||||| ||||||||| |||||||||||| ||||    
T  26990367 agagaaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataa 26990268  T
Q  112 ctc 114  Q
    |||    
T  26990267 ctc 26990265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 33149636 - 33149730
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| |||||||  |||| |||||||| |||||||||||||||||||| | ||||||||||||||||  |||||||||||    
T  33149636 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtat 33149730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 35943890 - 35943992
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||  |||||||  | || ||||||||||||||||||||||||||||| |||||||| |||||||||  ||||||||||| ||||    
T  35943890 agagaaagtgtgcttgtgtgggatccacgtaactacgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatcataa 35943989  T
Q  112 ctc 114  Q
    |||    
T  35943990 ctc 35943992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 14831914 - 14831822
Alignment:
Q  14 agaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||| |||||||  |||| ||||||||||||||| ||||||||||||| | |||||| |||||||||| |||||||||||    
T  14831914 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtat 14831822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 15409608 - 15409712
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||| ||||||||||||| || ||||| || | |||||||||||||||||||||||||||||  |||||||  |||||||| |||||||||||| ||||    
T  15409608 agagagagtgtgcttgtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgtcaaagaatgtattgtcacctaaggatgtctatgtatcataa 15409707  T
Q  112 ctctt 116  Q
    |||||    
T  15409708 ctctt 15409712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 2252166 - 2252269
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||| ||||||| || |||||||| |||| |||||||||||||||||||||||||  | |||||| ||||||||| |||| ||||||| ||||    
T  2252166 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaaggatgtttatgtatcataa 2252265  T
Q  112 ctct 115  Q
    ||||    
T  2252266 ctct 2252269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 18520882 - 18520976
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| || ||||  |||| ||||||||||||||||||||||||||||| | |||||| |||||||||  |||||||||||    
T  18520882 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtat 18520976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 35785301 - 35785207
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    |||||||||||| |||||| |||||||  | || ||||||||||||||||||||||||||||||| |||||| |||||||||  |||||||||||    
T  35785301 agagaaagtgtgattgtgcgggatccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtat 35785207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 3921263 - 3921368
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||| ||||||| || |||||||| |||| |||||||||||||||||||||||||  | |||||| |||||||||  ||| ||||||| ||||    
T  3921263 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 3921362  T
Q  112 ctcttt 117  Q
    ||||||    
T  3921363 ctcttt 3921368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 31009088 - 31008984
Alignment:
Q  14 agaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataact 113  Q
    ||||||||||||||||| |||||||  |||| |||||||||||||||||||||||||  ||  |||||||  |||||||| |||| ||||||| ||||||    
T  31009088 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtggaagaatgtattgtcacctaaggatgtttatgtatcataact 31008989  T
Q  114 ctttt 118  Q
    |||||    
T  31008988 ctttt 31008984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 36732940 - 36733044
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| || ||||  |||| | ||||||||||||||||||||||||||| | |||||| | |||||||  ||||||||||| || |    
T  36732940 agagaaagtgtgcttgtgcggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaagggtgtattgctacctaagggtgtctatgtatcatta 36733039  T
Q  112 ctctt 116  Q
    |||||    
T  36733040 ctctt 36733044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 42414304 - 42414379
Alignment:
Q  16 aaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccaccta 91  Q
    ||||||||||||||| || |||| ||||| ||||||||||||||||||||||||||||| | |||||| |||||||    
T  42414304 aaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccaccta 42414379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 40145509 - 40145415
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| || ||||  |||| ||||||||||||||||||||| ||| ||| | |||||| |||||||||  |||||||||||    
T  40145509 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaagggtgtattgccacctaagggtgtctatgtat 40145415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 39688895 - 39688999
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||| ||| ||| || | ||||||||||| | |||||||||||||||||||||||  |||||||| |||| ||||  ||| ||||||| ||||    
T  39688895 agagaaagtgtacttatgcggggttcatatgaccacatatcagatttttgtgtgggtgtcaagggatgtattgccacttaagggtgtttatgtatcataa 39688994  T
Q  112 ctctt 116  Q
    |||||    
T  39688995 ctctt 39688999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 33825322 - 33825413
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatg 103  Q
    |||||||||||||||||| | | | || |||| |||||||||||||||| ||||||||||||    |||||| |||||||||||||||||||    
T  33825322 agagaaagtgtgcttgtgtaaggttcacatgaacacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagaatgtctatg 33825413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 9603915 - 9603811
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    |||||||||||| ||||   || |||||||||||| ||||||||||||||||| ||||| ||    ||||||| |||||||| |||| ||||||| || |    
T  9603915 agagaaagtgtgattgtatggggtccatatgaccatgtgtcagatttttgtgtaggtgtgaatgagtgtattatcacctaaggatgtatatgtatcatta 9603816  T
Q  112 ctctt 116  Q
    |||||    
T  9603815 ctctt 9603811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 117
Target Start/End: Complemental strand, 38296304 - 38296200
Alignment:
Q  13 gagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataac 112  Q
    |||||||||||||||||  |||||||  |  | ||||||| ||||||||||||||| | || || ||||||  |||||||||  |||||||||| |||||    
T  38296304 gagaaagtgtgcttgtgttggatccacgtagctacgtgtctgatttttgtgtgggtattaagaggtgtattgacacctaagatagtctatgtatcataac 38296205  T
Q  113 tcttt 117  Q
    |||||    
T  38296204 tcttt 38296200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 39557515 - 39557594
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccaccta 91  Q
    |||||||||||| ||||   || ||||| ||| |||||||||||||||||||||| ||| || || ||||||||||||||    
T  39557515 agagaaagtgtgattgtatggggtccatgtgatcacgtgtcagatttttgtgtggatgttaagaggtgtattaccaccta 39557594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 16327975 - 16327922
Alignment:
Q  40 atgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaag 93  Q
    |||| |||||||||||||||| ||||||||||||  |||||||| |||||||||    
T  16327975 atgaacacgtgtcagatttttatgtgggtgtcaatggatgtattgccacctaag 16327922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 10356698 - 10356642
Alignment:
Q  51 tcagatttttgtgtgggtgtcaaaag-atgtattaccacctaagaatgtctatgtat 106  Q
    |||||||||||||||||||||||  | ||||||| ||||||||| ||||||||||||    
T  10356698 tcagatttttgtgtgggtgtcaatgggatgtattgccacctaaggatgtctatgtat 10356642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 36875644 - 36875695
Alignment:
Q  55 atttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    |||||||||||||||||||| | |||||| |||||||||  |||||||||||    
T  36875644 atttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtat 36875695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 10621085 - 10621185
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| ||||| || || | ||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||| ||||    
T  10621085 agagaaagtgtgcttgtgcgggatcgatgtggctacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataa 10621184  T
Q  112 c 112  Q
    |    
T  10621185 c 10621185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 1179938 - 1180032
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| | ||||| ||||| ||||||||||||||||||||||||||||| | ||||||||||||||||  |||||||||||    
T  1179938 agagaaagtgtgcttgtgcggaatccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtat 1180032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 5957932 - 5957838
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    |||||||||||| |||||| |||||||  |||| ||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||    
T  5957932 agagaaagtgtgattgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagaatgtctatgtat 5957838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 43414579 - 43414681
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||| | ||| || ||| ||||| |||||||||||| ||||    
T  43414579 agagaaagtgtgcttgtgcgggatccatgtgaccacgtgttagatttttgtgtgggtgtcaaagggtgtgttgccatctaaggatgtctatgtatcataa 43414678  T
Q  112 ctc 114  Q
    |||    
T  43414679 ctc 43414681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 15197435 - 15197341
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| || ||||  |||| ||||||||||||||||||||||||||||| | |||||| |||||||||| |||||||||||    
T  15197435 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtat 15197341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 34012294 - 34012388
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| |||||||  |||| |||||||| |||||||||||||||||||| | ||||||||||||||||  |||||||||||    
T  34012294 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtat 34012388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 37038579 - 37038478
Alignment:
Q  14 agaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataact 113  Q
    ||||||||||||||||| |||||||  |||| ||||||||||||||||||||||||||||| | |||||| ||||||||  |||||||||||| || |||    
T  37038579 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattact 37038480  T
Q  114 ct 115  Q
    ||    
T  37038479 ct 37038478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 32032826 - 32032724
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||| ||||||||||||||||||| |||| |||||||||||||||||| |||| || |||||||| |||||||||  ||| ||||||| ||||    
T  32032826 agagaaagtgtacttgtgcaggatccatatggccacatgtcagatttttgtgtggatgtc-aaggatgtattgccacctaagggtgtttatgtatcataa 32032728  T
Q  112 ctct 115  Q
    ||||    
T  32032727 ctct 32032724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 504119 - 504213
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    |||||| |||||||||||| || ||||  |||| ||||||||||||||||||||||||||||||| |||||| |||||||||  |||||||||||    
T  504119 agagaatgtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtat 504213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 14548024 - 14547930
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| || ||||  |||| ||||||||||||||||||||||||||||| | |||||| |||||||||  |||||||||||    
T  14548024 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaagggtgtctatgtat 14547930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 15048180 - 15048281
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| || ||||| || | ||||||||||||||||||| ||||||||| | |||||| ||||||||| |||||||||||| ||||    
T  15048180 agagaaagtgtgcttgtgcggggtccatgtggctacgtgtcagatttttgtgt-ggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataa 15048278  T
Q  112 ctc 114  Q
    |||    
T  15048279 ctc 15048281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 16056399 - 16056505
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||| ||||||| || |||||||| |||| |||||||||||||||||||||||||  ||||||||  ||| |||| |||| ||||||| ||||    
T  16056399 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgtcacataaggatgtttatgtatcataa 16056498  T
Q  112 ctctttt 118  Q
    |||||||    
T  16056499 ctctttt 16056505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 16383479 - 16383373
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||| ||||||| || |||||||| |||| |||||||||||||||||||||||||  | |||||| |||||||||  ||| ||||||| ||||    
T  16383479 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 16383380  T
Q  112 ctctttt 118  Q
    |||||||    
T  16383379 ctctttt 16383373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 24307791 - 24307895
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||| ||||||| || |||||||| |||| | |||||||||||||||||||||||  |||||||| |||||||||  ||| ||||||| ||||    
T  24307791 agagaaagtgtacttgtgcggggtccatatggccacatatcagatttttgtgtgggtgtcaagggatgtattgccacctaagggtgtttatgtatcataa 24307890  T
Q  112 ctctt 116  Q
    |||||    
T  24307891 ctctt 24307895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 12831149 - 12831055
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| || ||||  |||| ||||||||||||||||||||||||||||| | ||||||  ||||||||  |||||||||||    
T  12831149 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtat 12831055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 23122595 - 23122689
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||| ||| || ||||  |||| ||||||||||||||||||||||||||||||| |||||| |||| ||||  |||||||||||    
T  23122595 agagaaagtgtgcttatgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacttaagggtgtctatgtat 23122689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 40423941 - 40424035
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| || |||| ||||| ||||||||||||||||||||| ||||||| | |||||| |||||||||  | |||||||||    
T  40423941 agagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtatctatgtat 40424035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 4854861 - 4854965
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    |||||||||||||||||||||| ||||| || |||| | |||||||||| ||| ||||| ||| | |||||| ||||||||| |||||||||||| || |    
T  4854861 agagaaagtgtgcttgtgcagggtccatgtggccacatatcagatttttatgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcatta 4854960  T
Q  112 ctctt 116  Q
    |||||    
T  4854961 ctctt 4854965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 34307318 - 34307214
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||| ||||||| || | |||||| |||| |||||||||||||||||||||||||  | |||||| |||||||||  ||| ||||||| ||||    
T  34307318 agagaaagtgtacttgtgcggggttcatatgtccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 34307219  T
Q  112 ctctt 116  Q
    |||||    
T  34307218 ctctt 34307214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 10284629 - 10284734
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| || ||||  |||| |||||||| ||||||||||||||||||||   ||||||  ||| ||||  ||||||||||| ||||    
T  10284629 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagagtgtattgtcacttaagggtgtctatgtatcataa 10284728  T
Q  112 ctcttt 117  Q
    ||||||    
T  10284729 ctcttt 10284734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 15258927 - 15259031
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||| |||||||||||||| ||||  ||||||| |||||||||||| ||||| |||| |  |||||||| ||| |||||| | ||||||||| ||||    
T  15258927 agagaaaatgtgcttgtgcagggtccacgtgaccacatgtcagatttttatgtggatgtccagggatgtattgccatctaagagtatctatgtatcataa 15259026  T
Q  112 ctctt 116  Q
    |||||    
T  15259027 ctctt 15259031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 118
Target Start/End: Complemental strand, 24307708 - 24307625
Alignment:
Q  35 tccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataactctttt 118  Q
    |||||||| |||| | |||||||||||||||||||||||  |||||||| |||||||||  ||| ||||||| |||||||||||    
T  24307708 tccatatggccacatatcagatttttgtgtgggtgtcaatggatgtattgccacctaagggtgtttatgtatcataactctttt 24307625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 44507085 - 44507188
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||| ||||||| | || ||||  |||| ||||||||||||||||||||||||| |||   ||||||||||||||||  ||||||||||| || |    
T  44507085 agagaaagtatgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaagggtgtctatgtatcatta 44507184  T
Q  112 ctct 115  Q
    ||||    
T  44507185 ctct 44507188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 8841430 - 8841511
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaag 93  Q
    ||||||||||||||||||| || ||||  |||| |||||| |||||||||||||||||||||| | |||| | |||||||||    
T  8841430 agagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaag 8841511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 42221617 - 42221513
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    |||||||||||||||||   || |||||||||  |||||||||||||||||||||||||| |   |||||||  |||||||| |||| ||||||| || |    
T  42221617 agagaaagtgtgcttgtatggggtccatatgattacgtgtcagatttttgtgtgggtgtccaggaatgtattgtcacctaaggatgtatatgtatcatta 42221518  T
Q  112 ctctt 116  Q
    |||||    
T  42221517 ctctt 42221513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 9122287 - 9122229
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgt 70  Q
    ||||||||||||||||||| |||||||  |||| || ||||||||||||||||||||||    
T  9122287 agagaaagtgtgcttgtgcgggatccacgtgactacatgtcagatttttgtgtgggtgt 9122229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 30479472 - 30479574
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||| |||||||  | |||||||  |||| |||||||||||| ||||| ||||||| | |||||| |||||||||  ||| ||||||| ||||    
T  30479472 agagaaagtgtacttgtgcgaggtccatatagccacatgtcagatttttatgtggatgtcaaagggtgtattgccacctaagggtgtttatgtatcataa 30479571  T
Q  112 ctc 114  Q
    |||    
T  30479572 ctc 30479574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 38229530 - 38229429
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||| ||||||||| ||| |||||  ||||||| ||||||||||||||||||||||||  ||  ||||| |||||||||| |||  |||||| ||||    
T  38229530 agagaaaatgtgcttgtacagaatccacgtgaccacatgtcagatttttgtgtgggtgtcaggag-cgtattgccacctaagagtgttcatgtatcataa 38229432  T
Q  112 ctc 114  Q
    |||    
T  38229431 ctc 38229429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 20074964 - 20075026
Alignment:
Q  44 ccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    |||||||||| |||||| |||||||||||||   |||||| ||||||||| ||||||||||||    
T  20074964 ccacgtgtcacatttttatgtgggtgtcaaagagtgtattgccacctaaggatgtctatgtat 20075026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 17443927 - 17443824
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    |||||||||||  |||||  || |||| ||||| || ||||||||||||||||| |||| || |  ||||||  ||||||||  ||||||||||| ||||    
T  17443927 agagaaagtgtctttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgtatcataa 17443828  T
Q  112 ctct 115  Q
    ||||    
T  17443827 ctct 17443824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 50052426 - 50052532
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| || ||||  |||| ||||||||||||||||||||||||||||| | |||||| ||||||||| |||||||||||| || |    
T  50052426 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcatta 50052525  T
Q  112 ctctttt 118  Q
    |||||||    
T  50052526 ctctttt 50052532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 55475293 - 55475189
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||| ||| |||||| |||||||| |||| |||||||||||||||||||||||||| | |||||| ||||||||| |||| ||||||| ||||    
T  55475293 agagaaagtgtacttatgcagggtccatatggccacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtttatgtatcataa 55475194  T
Q  112 ctctt 116  Q
    |||||    
T  55475193 ctctt 55475189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 50813890 - 50813993
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||| ||||||| || | ||||||||||| |||||||||||||||||||||||||  | ||||||||||||||||| ||| ||||||| ||||    
T  50813890 agagaaagtgtacttgtgcggggttcatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattaccacctaagagtgtttatgtatcataa 50813989  T
Q  112 ctct 115  Q
    ||||    
T  50813990 ctct 50813993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 40574881 - 40574779
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||| | |||||||| |  |  |||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||| ||||    
T  40574881 agagaaagtgtgcttgttcgggatccatgtagcagcgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataa 40574782  T
Q  112 ctc 114  Q
    |||    
T  40574781 ctc 40574779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 29547961 - 29548061
Alignment:
Q  16 aaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataactct 115  Q
    ||||||| ||| ||| ||||||||||| |||| |||||||||||||||||||||||||  |||||||| ||||||||| |||| ||||||| ||||||||    
T  29547961 aaagtgtacttatgcgggatccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactct 29548060  T
Q  116 t 116  Q
    |    
T  29548061 t 29548061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 32767060 - 32766956
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||| |||||||||| |||||||| |||| |||||||||||||| ||||||||||  | |||||| |||||||||| ||| ||||||| ||||    
T  32767060 agagaaagtgtacttgtgcagggtccatatggccacatgtcagatttttgtatgggtgtcaaggggtgtattgccacctaagagtgtttatgtatcataa 32766961  T
Q  112 ctctt 116  Q
    |||||    
T  32766960 ctctt 32766956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 6034146 - 6034052
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| |||||||  |||| || |||||||||||||||||||||||||| | |||||| |||||||||  |||||||||||    
T  6034146 agagaaagtgtgcttgtgcgggatccacgtgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtat 6034052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 41236449 - 41236355
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| || ||||  |||| ||||||||||||||||||||| ||||||||| |||||| |||||||||  |||||||||||    
T  41236449 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaaaggtgtattgccacctaagggtgtctatgtat 41236355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 42044365 - 42044471
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| || ||||  |||| |||||||||||||||||||||||||  || |||||||| |||||||||  ||||||||||| || |    
T  42044365 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtacaaggatgtattgccacctaagggtgtctatgtatcatta 42044464  T
Q  112 ctctttt 118  Q
    |||||||    
T  42044465 ctctttt 42044471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 48183047 - 48183151
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| || ||||  |||| ||||||||||||||||||||||||||||| | |||||| |||| ||||  ||||||||||| || |    
T  48183047 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacgtaagggtgtctatgtatcatta 48183146  T
Q  112 ctctt 116  Q
    |||||    
T  48183147 ctctt 48183151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 50526171 - 50526263
Alignment:
Q  14 agaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    |||||| |||||||||| | |||||  |||||||||||||||||||||||||||||||||| | |||||| ||||||||  ||||||||||||    
T  50526171 agaaagcgtgcttgtgcggaatccacgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtat 50526263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 47986310 - 47986207
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||| ||||||| || |||||||| |||| |||||||||||||||||| ||||||  |||||||| |||||||||  ||| ||||||| ||||    
T  47986310 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtggatgtcaagggatgtattgccacctaagggtgtttatgtatcataa 47986211  T
Q  112 ctct 115  Q
    ||||    
T  47986210 ctct 47986207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 480445 - 480551
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||| | || ||||  |||| ||||||||||||||||||||||||||||| | ||||||  ||||||||  ||||||||||| || |    
T  480445 agagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcatta 480544  T
Q  112 ctctttt 118  Q
    |||||||    
T  480545 ctctttt 480551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 11511460 - 11511554
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| || ||||  |||| ||||||||||||||| ||||||||||||| | |||||| |||||||||  |||||||||||    
T  11511460 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtat 11511554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 19670714 - 19670820
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||| ||||||| || |||||||| |||| ||||||||||||||||| |||||||  | |||||| |||||||||  ||| ||||||| ||||    
T  19670714 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 19670813  T
Q  112 ctctttt 118  Q
    |||||||    
T  19670814 ctctttt 19670820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 31910294 - 31910192
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| || ||||| || | | |||||||||||||||||||||||||||   ||||||  |||||||| |||||||||||| ||||    
T  31910294 agagaaagtgtgcttgtgcggggtccatgtggctatgtgtcagatttttgtgtgggtgtcaaagagtgtattgtcacctaaggatgtctatgtatcataa 31910195  T
Q  112 ctc 114  Q
    |||    
T  31910194 ctc 31910192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 56300163 - 56300233
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtat 82  Q
    |||||||||||| ||||||||||| ||||||||||| |||||||||||||||||| ||||||| |||||||    
T  56300163 agagaaagtgtgtttgtgcaggattcatatgaccacatgtcagatttttgtgtggatgtcaaatgatgtat 56300233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 8343161 - 8343263
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||| | ||| ||| || |||||||| |||| |||||||||||| ||| ||||||||| |||||||| ||||||||| |||| ||||||| ||||    
T  8343161 agagaaagtatacttatgcggggtccatatggccacatgtcagatttttatgtaggtgtcaaaggatgtattgccacctaaggatgtttatgtatcataa 8343260  T
Q  112 ctc 114  Q
    |||    
T  8343261 ctc 8343263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 17983741 - 17983822
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaag 93  Q
    ||||||||||| ||||||| || |||||||| |||| |||||||||||||||||||||||||  | |||||| |||||||||    
T  17983741 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaag 17983822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 29239988 - 29239883
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||  || ||||  |||| |||||| |||||||||||||| ||||||| | |||||| |||||||||  ||||||||||| || |    
T  29239988 agagaaagtgtgcttgtgtggggtccacgtgactacgtgttagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcatta 29239889  T
Q  112 ctcttt 117  Q
    ||||||    
T  29239888 ctcttt 29239883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 29977987 - 29977908
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccaccta 91  Q
    ||||||||||||||||||  || |||||||||| ||||||||||||||||||||||||| ||  | |||||| |||||||    
T  29977987 agagaaagtgtgcttgtgtggggtccatatgactacgtgtcagatttttgtgtgggtgttaaggggtgtattgccaccta 29977908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 41823984 - 41823926
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgt 70  Q
    ||||||||||||||||||| || ||||| |||| |||||||||||||||||||||||||    
T  41823984 agagaaagtgtgcttgtgcggggtccatgtgactacgtgtcagatttttgtgtgggtgt 41823926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 54473535 - 54473625
Alignment:
Q  16 aaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||| || ||||  |||| |||||| |||||||||||||||||||||| | ||||||  ||||||||  |||||||||||    
T  54473535 aaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaatggtgtattgtcacctaagggtgtctatgtat 54473625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 29234243 - 29234346
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||| || ||||  |||| ||||||||||||||||||  ||| ||||| | |||||| ||| |||||  ||||||||||| || |    
T  29234243 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgaaggtatcaaagggtgtattgccatctaagggtgtctatgtatcatta 29234342  T
Q  112 ctct 115  Q
    ||||    
T  29234343 ctct 29234346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 114
Target Start/End: Original strand, 55079735 - 55079814
Alignment:
Q  35 tccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataactc 114  Q
    |||||||| |||| |||||||||||||| |||||||||| || |||||| |||||||||  ||| ||||||| |||||||    
T  55079735 tccatatggccacatgtcagatttttgtatgggtgtcaagaggtgtattgccacctaagggtgtttatgtatcataactc 55079814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 3481756 - 3481662
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||  || ||||  |||| | |||||||||||||||||||||||||||   |||||| ||||||||   |||||||||||    
T  3481756 agagaaagtgtgcttgtgtggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaaggtgtctatgtat 3481662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 44536744 - 44536846
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||| ||| ||  || || |||||||||| |||||||||||||||||| |||| || | |||||| |||||||| | ||| ||||||| ||||    
T  44536744 agagaaagtgtacttatgtggggtctatatgaccacatgtcagatttttgtgtggatgtc-aagggtgtattgccacctaaaagtgtttatgtatcataa 44536842  T
Q  112 ctct 115  Q
    ||||    
T  44536843 ctct 44536846  T

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Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 28480267 - 28480369
Alignment:
Q  13 gagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataac 112  Q
    ||||||||||| |||||  || |||| ||||| || ||||||||||||||||| |||| || |  ||||||  ||||||||  ||||||||||| |||||    
T  28480267 gagaaagtgtgtttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgtattataac 28480366  T
Q  113 tct 115  Q
    |||    
T  28480367 tct 28480369  T

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Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 28481142 - 28481244
Alignment:
Q  13 gagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataac 112  Q
    ||||||||||| |||||  || |||| ||||| || ||||||||||||||||| |||| || |  ||||||  ||||||||  ||||||||||| |||||    
T  28481142 gagaaagtgtgtttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgtattataac 28481241  T
Q  113 tct 115  Q
    |||    
T  28481242 tct 28481244  T

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Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 28482017 - 28482119
Alignment:
Q  13 gagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataac 112  Q
    ||||||||||| |||||  || |||| ||||| || ||||||||||||||||| |||| || |  ||||||  ||||||||  ||||||||||| |||||    
T  28482017 gagaaagtgtgtttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgtattataac 28482116  T
Q  113 tct 115  Q
    |||    
T  28482117 tct 28482119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 24995105 - 24995186
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaag 93  Q
    ||||||| ||||||||||| || ||||  |||| |||||||| |||||| ||||||||||||| | |||||| ||| |||||    
T  24995105 agagaaaatgtgcttgtgcggggtccacgtgactacgtgtcaaatttttatgtgggtgtcaaagggtgtattgccatctaag 24995186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 29589738 - 29589799
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaa 73  Q
    ||||||||||| ||||||  || |||||||| |||| | |||||||||||||||||||||||    
T  29589738 agagaaagtgtacttgtgtggggtccatatggccacatatcagatttttgtgtgggtgtcaa 29589799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 23608337 - 23608233
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||||  |  | ||  |||| ||||||||||||||||||||||||||||| | ||||||  || |||||  ||||||| ||| || |    
T  23608337 agagaaagtgtgcttgtgtggagttcacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgtcatctaagggtgtctatatatcatta 23608238  T
Q  112 ctctt 116  Q
    |||||    
T  23608237 ctctt 23608233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 47104646 - 47104542
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    |||||||||||| |||||  || || |||  ||||||||||| |||||||||||||||||| |   ||||||  || |||||||||||||| ||| || |    
T  47104646 agagaaagtgtgtttgtgtggggtcaataaaaccacgtgtcaaatttttgtgtgggtgtcagagagtgtattgtcatctaagaatgtctatatatcatta 47104547  T
Q  112 ctctt 116  Q
    |||||    
T  47104546 ctctt 47104542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 48647724 - 48647828
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||| ||||||||||| |  ||||  ||||||||||| |||||||| ||||||||| || || ||||||   ||||||| |||| ||||| | ||||    
T  48647724 agagaaattgtgcttgtgcggagtccacgtgaccacgtgttagatttttatgtgggtgttaagaggtgtattgttacctaaggatgtttatgtgtcataa 48647823  T
Q  112 ctctt 116  Q
    |||||    
T  48647824 ctctt 48647828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 70
Target Start/End: Complemental strand, 18769183 - 18769153
Alignment:
Q  40 atgaccacgtgtcagatttttgtgtgggtgt 70  Q
    |||||||||||||||||||||||||||||||    
T  18769183 atgaccacgtgtcagatttttgtgtgggtgt 18769153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 29535478 - 29535377
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    |||||||||||| |||||  |||||||  || ||| ||| || |||||||||||| |  ||| |||||||||  ||||||||| ||||||||||| ||||    
T  29535478 agagaaagtgtgtttgtgtgggatccacgtggccatgtg-catatttttgtgtggataccaagagatgtattgtcacctaagattgtctatgtatcataa 29535380  T
Q  112 ctc 114  Q
    |||    
T  29535379 ctc 29535377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 53352564 - 53352657
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||| ||||||||| || ||||  | || ||||||||||||||||||| ||||| |||  |||||||  ||||||||  |||||||||||    
T  53352564 agagaaagtatgcttgtgcggggtccacttaactacgtgtcagatttttgtgtaggtgttaaagaatgtatt-gcacctaagggtgtctatgtat 53352657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 10107 - 10213
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtataataa 111  Q
    ||||||||||||||||| |  | ||||  |||| ||||||||||||||| ||||| ||||||| |||||||| ||||||||   ||||||||||| ||||    
T  10107 agagaaagtgtgcttgtacgcggtccacgtgactacgtgtcagatttttatgtggatgtcaaaggatgtattgccacctaaaggtgtctatgtatcataa 10206  T
Q  112 ctctttt 118  Q
    |||||||    
T  10207 ctctttt 10213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 152600 - 152539
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaa 73  Q
    |||||||||||  |||||| |||||||||||||||| |||||||||||||||||||||||||    
T  152600 agagaaagtgtatttgtgcgggatccatatgaccacatgtcagatttttgtgtgggtgtcaa 152539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 927 - 1021
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| |||| ||  |||| ||||||||| ||||||||||| ||| ||| | |||||| ||||||||  ||||||||||||    
T  927 agagaaagtgtgcttgtgcgggattcacgtgactacgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtat 1021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 927 - 1021
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||||||| |||| ||  |||| ||||||||| ||||||||||| ||| ||| | |||||| ||||||||  ||||||||||||    
T  927 agagaaagtgtgcttgtgcgggattcacgtgactacgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtat 1021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 4131 - 4037
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtcaaaagatgtattaccacctaagaatgtctatgtat 106  Q
    ||||||||||||||| ||| |||||||  | || ||||||||||||||||||||||||| ||||| |||||| ||| ||||   |||||||||||    
T  4131 agagaaagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtat 4037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 17156 - 17097
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgaccacgtgtcagatttttgtgtgggtgtc 71  Q
    ||||||| ||||||||||| || ||||| ||||||| |||||||||||||||||| ||||    
T  17156 agagaaaatgtgcttgtgcggggtccatgtgaccacatgtcagatttttgtgtggatgtc 17097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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