View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17219_low_12 (Length: 258)
Name: NF17219_low_12
Description: NF17219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17219_low_12 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 258
Target Start/End: Complemental strand, 29321220 - 29320977
Alignment:
| Q |
14 |
caaagggaaggtatgtatgcatatatatgatatatgatattgaataagcttttaagctcaagtgttttcttgatgatgcattaccttatagaaatcatgc |
113 |
Q |
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| T |
29321220 |
caaagggaaggtatgtatgcatatatatgatatatgatattgaataagcttttaagctcaagtgttttcttgatgatgcattaccttatagaaatcatgc |
29321121 |
T |
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| Q |
114 |
catgtcaagtaatttttctgtgtactctgtagaacattgtttccagaagcaaatacgtgtttctaagcattacnnnnnnnntgattaaggataaatcgtg |
213 |
Q |
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| T |
29321120 |
catgtcaagtaatttttctgtgtactctgtagaacattgttttcagaagcaaatgcgtgtttctaagcattacaaaaaaaatgattaaggataaatcgtg |
29321021 |
T |
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| Q |
214 |
tgagctagggtaaatcgtgataaaggatttaattaggtctgcagt |
258 |
Q |
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| T |
29321020 |
tgagctagggtaaatcgtgat-aaggatttaattaggtctgcagt |
29320977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 29304045 - 29303885
Alignment:
| Q |
28 |
gtatgcatatatatgatatatgatattgaataagcttttaag-ctcaagtgttttcttgatgatgcattaccttatagaaa-----------tcatgcca |
115 |
Q |
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| T |
29304045 |
gtatgtatctatatgacatatgatattgaatgagctttgaactctcaattgttttttcgatgatgcattaccttgtagaaaaagcaatcatgtcatgtca |
29303946 |
T |
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| Q |
116 |
tgtcaagtaatttttctgtgtactctgtagaacattgtttccagaagcaaatacgtgtttcta |
178 |
Q |
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| T |
29303945 |
tgtcatgtaatttt--tgtgtactatgtagtacattgtttcgagaagcatgtatgtgtttcta |
29303885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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