View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17219_low_16 (Length: 248)
Name: NF17219_low_16
Description: NF17219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17219_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 10366367 - 10366597
Alignment:
| Q |
1 |
aaaagttttcttttatgagaatgtgccgaatggggatgttccaatccttaactagataactttgaattagctctaagaggttggcataataatgaaattt |
100 |
Q |
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| T |
10366367 |
aaaagttttcttttatgagaatgtgctgaatggagatgttccaatcctcaactagataatttcgaattagctctaagaggttggtataatgatgaaattt |
10366466 |
T |
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| Q |
101 |
cagtgtctcttttaccactaaatgaactacatggagaaaatcagaaaataacataannnnnnngaagcacacttaccaatggagagtaatttctgttaga |
200 |
Q |
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| T |
10366467 |
cagtgtctcctttaccactaaatgaactacatggagaaaatcagaaaatgacataatttttttgaagcacactcaccaacagagagtaatttccgttaga |
10366566 |
T |
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| Q |
201 |
gtttgaatctctgcatgtaaaacgtttgaca |
231 |
Q |
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| T |
10366567 |
gtttgaatctctgcatgtaaaacgtttgaca |
10366597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 15976877 - 15976784
Alignment:
| Q |
43 |
aatccttaactagataactttgaattagctctaagaggttggcataataatgaaatttcagtgtctcttttaccactaaatgaactacatggag |
136 |
Q |
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| T |
15976877 |
aatccttaactaaataacttcgaattagctccagggggttggcataatgattaaacctcgatgtctcctttgccgctaactgaactacatggag |
15976784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 45057238 - 45057329
Alignment:
| Q |
5 |
gttttcttttatgagaatgtgccgaatggggatgttccaatccttaactagataactttgaattagctctaagaggttggcataataatgaaa |
97 |
Q |
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| T |
45057238 |
gtttccttctatgagaatgtggtga-tggagatgtctcaatccttaacaagataactttaaattagctgaaggaggttggcataatgatgaaa |
45057329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 37127046 - 37127004
Alignment:
| Q |
54 |
agataactttgaattagctctaagaggttggcataataatgaa |
96 |
Q |
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| T |
37127046 |
agataactttgaattatctctaagaggttagcataatgatgaa |
37127004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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