View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17219_low_17 (Length: 248)
Name: NF17219_low_17
Description: NF17219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17219_low_17 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 29320366 - 29320596
Alignment:
| Q |
18 |
acaggtgtcaatctgcagcattaatatgtctgtacctgtacacgggcacaagagttacatctaatgatggggactagtttctccaaaaacttcttgtgat |
117 |
Q |
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| T |
29320366 |
acaggtgtcaatctgcagcattaatatgtctgtacctgtacacgggcacaagagttacatctaatgatgggaactagtttctccaaaaacttcttgtgat |
29320465 |
T |
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| Q |
118 |
attgagcctgaattagtagttccttatgttcactcaaaactgaaattgttggcatagtagcccaaagtactcgagggtccaaatcatccagtgacttaag |
217 |
Q |
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| T |
29320466 |
attgatcctgaattagtagttccttatgttcactcaaaactgaaattgttggcatagtagcccaaagtactcgagggtccaaatcatccagtgacttaag |
29320565 |
T |
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| Q |
218 |
ggccagcatcgcaacttggttaaagtatagc |
248 |
Q |
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| T |
29320566 |
ggccagcatcgcaacttggttaaagtatagc |
29320596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 34 - 248
Target Start/End: Original strand, 29331345 - 29331559
Alignment:
| Q |
34 |
agcattaatatgtctgtacctgtacacgggcacaagagttacatctaatgatggggactagtttctccaaaaacttcttgtgatattgagcctgaattag |
133 |
Q |
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| T |
29331345 |
agcattaatatgtttgtacctgcacacgggcacaagaattacacctgatgacaggaactagtttctccaagaacttcttgtgatattgagaacgcattaa |
29331444 |
T |
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| Q |
134 |
tagttccttatgttcactcaaa-actgaaattgttggcatagtagcccaaagtactcgagggtccaaatcatccagtgacttaagggccagcatcgcaac |
232 |
Q |
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| T |
29331445 |
tagttccttacattcactcaaacact-taactgcatgcatagtagcccaaagtactcggtggttcggctcatccagtgacttaaggaccagtatcgcaac |
29331543 |
T |
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| Q |
233 |
ttggttaaagtatagc |
248 |
Q |
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| T |
29331544 |
ttcgttaaagtatagc |
29331559 |
T |
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