View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17219_low_18 (Length: 244)
Name: NF17219_low_18
Description: NF17219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17219_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 6684467 - 6684624
Alignment:
| Q |
13 |
aaggaaaaatggggtagactgagtaaaacaaaattctgcaacacaagcccaacttttgctctccaaatgaaggtcaagtccaactgtgagcaatgttgaa |
112 |
Q |
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| T |
6684467 |
aaggaaaaatggggtagactgagtaaaacaaaattctgcaacacaagcccaacttttgctctccaaatgaaggtcaagtccaactgtgagcaatgttgaa |
6684566 |
T |
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| Q |
113 |
aatctgagatgagaaacacgtgagaacactaaacgcacttttttcttcttcccgaaat |
170 |
Q |
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| T |
6684567 |
aatctgagatgagaaacacgtgagaacacaaaacacgcttttttcttcttcccgaaat |
6684624 |
T |
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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 6684675 - 6684737
Alignment:
| Q |
167 |
aaattacaattacttctccaaaacgtgtttttgcaaggaagaacaaaaacaaaacgtgattct |
229 |
Q |
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| T |
6684675 |
aaattacaattacttctccaaaacgtgattctgcaaggaagatcaaaaacaaaacctgattct |
6684737 |
T |
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