View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17219_low_19 (Length: 233)
Name: NF17219_low_19
Description: NF17219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17219_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 15 - 163
Target Start/End: Complemental strand, 45473305 - 45473157
Alignment:
| Q |
15 |
aaattatacgatagtaggaaaacacttgctatacaagggcaatatggtaatatagaaaatagctgatggatagattggtaattacaactttaaattagtg |
114 |
Q |
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| T |
45473305 |
aaattatacgacagtagaaaaacacttgccatacaagggcgatatggtaatatagaaaatagctgatggatagattggtaattacaactttaaattagtg |
45473206 |
T |
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| Q |
115 |
taattcttgcttttcgttgaatttgttttcgtaacaagtaccattagcc |
163 |
Q |
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| T |
45473205 |
taattcttgcttttcgttgaatttgttttcgtaacaagcagcattagcc |
45473157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 12170287 - 12170179
Alignment:
| Q |
15 |
aaattatacgatagtaggaaaacacttgctatacaagggcaatatggtaatatagaaaatagctgatggatagattggtaattacaactttaaattagtg |
114 |
Q |
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| T |
12170287 |
aaattatacgacagtaggaaaacacttgccatacaagggcaatatggtaatatagaaaatagctgatggatagattggtaattacaactttaaattagtg |
12170188 |
T |
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| Q |
115 |
taattcttg |
123 |
Q |
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| T |
12170187 |
taattcttg |
12170179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 31195956 - 31195839
Alignment:
| Q |
14 |
aaaattatacgatagtaggaaaacacttgctatacaagggcaatatggtaatatagaaaatagctgatggatagattggtaattacaactttaaattagt |
113 |
Q |
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| T |
31195956 |
aaaattatacggcattagaaaaacacttgtcatacaagggcaacatggtaatatagaaaatggctgatggatatatcggtaattacaactttaaattagt |
31195857 |
T |
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| Q |
114 |
gtaattcttgcttttcgt |
131 |
Q |
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| T |
31195856 |
gtaattcttgcttttcgt |
31195839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 63 - 151
Target Start/End: Original strand, 14017941 - 14018029
Alignment:
| Q |
63 |
aatatagaaaatagctgatggatagattggtaattacaactttaaattagtgtaattcttgcttttcgttgaatttgttttcgtaacaa |
151 |
Q |
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| T |
14017941 |
aatatagaaaatagctgttgaatagattggtaattacaacttaaaattagtgtaattcttgcttttcgttgaatttgttttcgtaacaa |
14018029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 54 - 151
Target Start/End: Original strand, 13996633 - 13996731
Alignment:
| Q |
54 |
caatatggtaatatagaaaatagctgatggatagattggtaattacaactttaaattagtgtaattcttgcttttcgttgaa-tttgttttcgtaacaa |
151 |
Q |
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| T |
13996633 |
caatatggaaatatagtaaatagctaatgaatagattggtaattacaacttaaaattagtgtaattcttgtttgtcgttgaattttgttttcgtaacaa |
13996731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 30387060 - 30387019
Alignment:
| Q |
110 |
tagtgtaattcttgcttttcgttgaatttgttttcgtaacaa |
151 |
Q |
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| T |
30387060 |
tagtgtaattcttgcttttcgttgaatttgttttcctaacaa |
30387019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 39559549 - 39559697
Alignment:
| Q |
16 |
aattatacgatagtaggaaaacacttgctatacaagggcaatatggtaatatagaaaatagctgatggatagattggtaattacaactttaaattagtgt |
115 |
Q |
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| T |
39559549 |
aattatacgacagtaggaaaacacttgcaatacaagggcaatacgataatatactagatggctgatggctagattggtaattacagctttaaattagtgc |
39559648 |
T |
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| Q |
116 |
aattcttgcttttcgttgaatttgttttcgtaacaagtaccattagcca |
164 |
Q |
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| ||| | |||||||||||||| |||||||||||| | ||||||||| |
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| T |
39559649 |
agttcctacttttcgttgaattgattttcgtaacaaacagcattagcca |
39559697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 51039323 - 51039427
Alignment:
| Q |
27 |
agtaggaaaacacttgctatacaagggcaatatggtaatatagaaaatagctgatggatagattggtaattacaactttaaattagtgtaattcttgctt |
126 |
Q |
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|||| |||| ||||||| ||| ||||| |||||||| ||||| ||||| | |||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
51039323 |
agtaagaaagcacttgccatataagggtaatatggtgatatataaaattgttgatggatttattggtaattacaactttaatttagtgtaattcttgctt |
51039422 |
T |
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| Q |
127 |
ttcgt |
131 |
Q |
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||||| |
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| T |
51039423 |
ttcgt |
51039427 |
T |
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