View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17219_low_4 (Length: 428)
Name: NF17219_low_4
Description: NF17219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17219_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 14 - 413
Target Start/End: Original strand, 38398496 - 38398894
Alignment:
| Q |
14 |
gaagcaaaacatcacagaggtgtaccacaattggcagaagctggtaagcacactttaatctacttatccaaaacatcacaaaattgagtgaaatgcatct |
113 |
Q |
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| T |
38398496 |
gaagcaaaacatcacagaggtgtaccacaattggcagaagctggtaag-acactttaatctacttttccaaaacatcacaaaattgagtgaaatgcatct |
38398594 |
T |
|
| Q |
114 |
actgttaacttgtcttatttttcttgtaccaatttatattgctatttttgttcttaacaatttttcctctttaattaatctgactacagaatcatgatag |
213 |
Q |
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| T |
38398595 |
attgttaacttgtcttatttttcttgtaccaatttatattgctatttttgttcttaacaatttttcctctttaattaatctgactacagaatcatgatag |
38398694 |
T |
|
| Q |
214 |
acaactatggaagttaggaacactgccacctggtcttataacattctggaaacgcacgttcccgctgaaccgatcttggcatgtcttaggtcttggcttc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38398695 |
acaactatggaagttaggaacactgccacctggtcttataacattctggaaacgcacgttcccgctgaaccgatcttggcatgtcttaggtcttggctac |
38398794 |
T |
|
| Q |
314 |
aaccccaatgtcaaccaaaaagatattgaaagggctgctgtaattcactataacggaaacttgaaaccgtggctggagataagtataccgaagtttaaag |
413 |
Q |
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| T |
38398795 |
aaccccaatgtcaaccaaaaagatattgaaagggctgctgtaattcactataacggaaacttgaaaccgtggctggagataagtataccgaagtttaaag |
38398894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 173 - 399
Target Start/End: Complemental strand, 56069685 - 56069453
Alignment:
| Q |
173 |
atttttcctctttaattaatctgactacagaatcatgatagacaactatggaagttaggaacactgccacctggtcttataacattctggaaacgcacgt |
272 |
Q |
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| T |
56069685 |
atttttcctctctaattaatccgactacagaatcatgatagacaattatggaaattaggaacactgccacctggtcttatgacattctggaaacatactt |
56069586 |
T |
|
| Q |
273 |
tcccgctgaaccgatcttggcatgtcttaggtcttggcttcaaccccaatgtcaaccaaaaagatattgaaagggctgctgtaattcac------tataa |
366 |
Q |
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| T |
56069585 |
tcccgctgaaccgatcctggcacgtcttgggtcttggctacaaccctgatgtcaaccaaaaagatatcgaaagtgctgctgtaatacacactatatataa |
56069486 |
T |
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| Q |
367 |
cggaaacttgaaaccgtggctggagataagtat |
399 |
Q |
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| T |
56069485 |
tggaaatatgaaaccatggctcgagataagtat |
56069453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 56069822 - 56069715
Alignment:
| Q |
14 |
gaagcaaaacatcacagaggtgtaccacaattggcagaagctggtaagcacactttaatctacttatccaaaacatcacaaaattgagtgaaatgcatct |
113 |
Q |
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|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||| |||||||| | |||||||||||| |||||||||| |
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| T |
56069822 |
gaagcaaaacatcacagaggtgtaccacaaatggcagaaactggtaagcacactttaatttacttttccaaaacttgacaaaattgagttaaatgcatct |
56069723 |
T |
|
| Q |
114 |
actgttaa |
121 |
Q |
| |
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||||||| |
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| T |
56069722 |
gctgttaa |
56069715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 200 - 410
Target Start/End: Original strand, 10170992 - 10171202
Alignment:
| Q |
200 |
cagaatcatgatagacaactatggaagttaggaacactgccacctggtcttataacattctggaaacgcacgttcccgctgaaccgatcttggcatgtct |
299 |
Q |
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| T |
10170992 |
cagaatcatgatagacaactgtggaagttaggaacactgccaccaggtctcataaccttctggaaacgcactttcccactgaacaaagcgtggcatgtgt |
10171091 |
T |
|
| Q |
300 |
taggtcttggcttcaaccccaatgtcaaccaaaaagatattgaaagggctgctgtaattcactataacggaaacttgaaaccgtggctggagataagtat |
399 |
Q |
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| T |
10171092 |
tgggtcttggctacaatcccaacgtcaaccaaaaagatattgatcgggctgctgttatgcactacaatgggaacatgaagccatggttggagataagtat |
10171191 |
T |
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| Q |
400 |
accgaagttta |
410 |
Q |
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| T |
10171192 |
tcccaagttta |
10171202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 10170623 - 10170667
Alignment:
| Q |
17 |
gcaaaacatcacagaggtgtaccacaattggcagaagctggtaag |
61 |
Q |
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| T |
10170623 |
gcaaaagatcacagaggtgtaccacaactggcagaatttggtaag |
10170667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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