View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17219_low_9 (Length: 299)
Name: NF17219_low_9
Description: NF17219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17219_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 35499180 - 35499449
Alignment:
| Q |
1 |
ggatacaaaattccatcttaagctttcagagatgatttcactgcataaccatcttgacaactcctaaattttccaggcttagtaactttggccccagaca |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35499180 |
ggatacaaaattccatcttcagctttcagagatgatttcactgcataaccatcttgacaactcctaaattttccaggcttagtaactttggccccagaca |
35499279 |
T |
|
| Q |
101 |
agccacgtaatactgtggtgaacacttcatggataagcccctgattattgaattgtaaatgaaacatatcaactattacattgcatcagatgcaatatgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35499280 |
agccacgtaatactgtggtgaacacttcatggataagcccctgattattgaattgtaaatgaaacatatcaactattacattgcatcagatgcaatatgc |
35499379 |
T |
|
| Q |
201 |
acaacccatagtgccaaatttacacatcaatcaatcaactaaaattatgctgtttctattttcccaagca |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35499380 |
acaacccatagtgccaaatttacacatcaatcaatcaactaaaattatgctgtttctattttcccaagca |
35499449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 7072413 - 7072237
Alignment:
| Q |
1 |
ggatacaaaattccatcttaagctttcagagatgatttcactgcataaccatcttgacaactcctaaattttccaggcttagtaactttggccccagaca |
100 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||| |
|
|
| T |
7072413 |
ggatacagaattccatcttcagctttcaaagatgacttcactgcataaccatcttgacaactcctaaattttccaggcttggtaactttgcccccggaca |
7072314 |
T |
|
| Q |
101 |
agccacgtaatactgtggtgaacacttcatggataagcccctgattattgaattgtaaatgaaacatatcaactatt |
177 |
Q |
| |
|
| ||||| |||| |||||| ||||||||||||||||||||||||||||||||| || ||| ||| |||||||||||| |
|
|
| T |
7072313 |
aaccacgcaatattgtggtaaacacttcatggataagcccctgattattgaatagtgaattaaatatatcaactatt |
7072237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University