View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1721_high_36 (Length: 244)
Name: NF1721_high_36
Description: NF1721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1721_high_36 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 14541890 - 14541662
Alignment:
| Q |
1 |
acaagaataaaaatgatcattcagtgtttgaaatattacacttaataacaaaaatgcaacatactcataactaacgaattacaactctattgtactgcaa |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14541890 |
acaagaataaaaatgatcattcggtgtttgaaatattacacttaataacgaaaatgcaacatactcataactaacgaattacaactctattgtactgcaa |
14541791 |
T |
|
| Q |
101 |
ttggtgcattggtccttgcagccttaatggtttttgctggttggtttaattatcacaaagctgctacaaaattggcttggttccaggatgtagaatccat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14541790 |
ttggtgcattggtccttgcagccttaatggtttttgctagttggtttaattatcacaaagctgctacaaaattggcttggttccaggatgtagaatccat |
14541691 |
T |
|
| Q |
201 |
gttgaatgaccatttggcagggttcctag |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
14541690 |
gttgaatgaccatttggcagggttcctag |
14541662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 67 - 222
Target Start/End: Complemental strand, 18177486 - 18177331
Alignment:
| Q |
67 |
ataactaacgaattacaactctattgtactgcaattggtgcattggtccttgcagccttaatggtttttgctggttggtttaattatcacaaagctgcta |
166 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18177486 |
ataactaatgaattacaactctattgtactgcaattggtgcattggtctttgcagccttaatgctttttgctggttggtttcattatcacaaagctgctc |
18177387 |
T |
|
| Q |
167 |
caaaattggcttggttccaggatgtagaatccatgttgaatgaccatttggcaggg |
222 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
18177386 |
caaaattggcttggttccaagatgtagaatccatgttgaatcaccatttggcaggg |
18177331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 67 - 222
Target Start/End: Original strand, 13216608 - 13216763
Alignment:
| Q |
67 |
ataactaacgaattacaactctattgtactgcaattggtgcattggtccttgcagccttaatggtttttgctggttggtttaattatcacaaagctgcta |
166 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13216608 |
ataactaatgaattacaactctattgtactgcaattggtgcattggtctttgcagccttaatgctttttgctggttggtttcattatcacaaagctgctc |
13216707 |
T |
|
| Q |
167 |
caaaattggcttggttccaggatgtagaatccatgttgaatgaccatttggcaggg |
222 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13216708 |
caaaattggcttggttccaagatgtagaatccatgttgaatcaccatttggcaggg |
13216763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 67 - 212
Target Start/End: Complemental strand, 241101 - 240956
Alignment:
| Q |
67 |
ataactaacgaattacaactctattgtactgcaattggtgcattggtccttgcagccttaatggtttttgctggttggtttaattatcacaaagctgcta |
166 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||| ||||||||||||| ||| |
|
|
| T |
241101 |
ataactagtgaattacaactctattgtactgcaattggtgcattggtttttgcagcgttaatgctttttgctggttggttccattatcacaaagccgctc |
241002 |
T |
|
| Q |
167 |
caaaattggcttggttccaggatgtagaatccatgttgaatgacca |
212 |
Q |
| |
|
| |||||||| |||||||| ||||||||||||||||||||| |||| |
|
|
| T |
241001 |
ccaaattggcctggttccaagatgtagaatccatgttgaatcacca |
240956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 50995584 - 50995648
Alignment:
| Q |
131 |
tttttgctggttggtttaattatcacaaagctgctacaaaattggcttggttccaggatgtagaa |
195 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
50995584 |
tttttgctggttggtttcattatcacaaagctgctccaaaattggcttggttccaagatgtagaa |
50995648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 50995483 - 50995538
Alignment:
| Q |
152 |
atcacaaagctgctacaaaattggcttggttccaggatgtagaatccatgttgaat |
207 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
50995483 |
atcacaaagctgctccaaaattggcttggttccaagatgtagaatccatgttgaat |
50995538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 50995586 - 50995538
Alignment:
| Q |
157 |
aaagctgctacaaaattggcttggttccaggatgtagaatccatgttga |
205 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
50995586 |
aaagctgctccaaaattggcttggttccaagatgtagaatccatgttga |
50995538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 50995433 - 50995479
Alignment:
| Q |
89 |
attgtactgcaattggtgcattggtccttgcagccttaatggttttt |
135 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||| ||| ||||| |
|
|
| T |
50995433 |
attgtactgcaattggtgcattgatctttgcagccttcatgtttttt |
50995479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University