View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1721_high_38 (Length: 240)
Name: NF1721_high_38
Description: NF1721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1721_high_38 |
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| [»] scaffold0057 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 42046441 - 42046586
Alignment:
| Q |
1 |
tcgttggtggttccaggagcataatccaatagcacgtacttatcatcattgatgaaaatgtaagcttcattgtgcctagatgaacgaaatgcagccctta |
100 |
Q |
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| T |
42046441 |
tcgttggtggttccaggagcataatccaatagcacgtacttatcatcattgatgaaaatgtaagcttcattgtgcctagatgaacgaaaagcagccctta |
42046540 |
T |
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| Q |
101 |
tgtaaccagattttgtcatctttgaaaggttattttgtgagcaaat |
146 |
Q |
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| T |
42046541 |
tgtaaccagattttgtcatctttgaaaggttattttgtgagcaaat |
42046586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 146 - 220
Target Start/End: Original strand, 42054486 - 42054560
Alignment:
| Q |
146 |
taaaagaaaacagagaagggtatttatagatacacaatgataaaataaaatccttaatttcttcctccaccgtta |
220 |
Q |
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| T |
42054486 |
taaaagaaaacagagaagggtatttatagatacacaatgataaaataaaatccttaatttcttcctccaccgtta |
42054560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 3352112 - 3352035
Alignment:
| Q |
45 |
atcattgatgaaaatgtaagcttcattgtgcctagatgaacgaaatgcagcccttatgtaaccagattttgtcatctt |
122 |
Q |
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| T |
3352112 |
atcattcatgaaaaagtaagcttcattgttcctagatgaacgaaatgcagcatctatgtaaccagattttgtcatctt |
3352035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 42471628 - 42471743
Alignment:
| Q |
1 |
tcgttggtggttccaggagcataatccaatagcacgtacttatcatcattgatgaaaatgtaagcttcattgtgcctagatgaacgaaatgcagccctta |
100 |
Q |
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| T |
42471628 |
tcgttgggggttcccggagcataatccaatagtacgtatttatcat---tcatgaaaaagtaagcttcgttgttcctagatgaacgaaatgcagcattaa |
42471724 |
T |
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| Q |
101 |
tgtaaccagattttgtcat |
119 |
Q |
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| T |
42471725 |
tgtaaccaggttttgtcat |
42471743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 63631 - 63746
Alignment:
| Q |
1 |
tcgttggtggttccaggagcataatccaatagcacgtacttatcatcattgatgaaaatgtaagcttcattgtgcctagatgaacgaaatgcagccctta |
100 |
Q |
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| T |
63631 |
tcgttgctggttccgggagcataatccaatagcaagagctt---atcattgatgaaaaagtatgcttcattttttctagatgaacgaaatactgcattta |
63727 |
T |
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| Q |
101 |
tgtaaccagattttgtcat |
119 |
Q |
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| T |
63728 |
tgtaaccagattttgtcat |
63746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 37575 - 37693
Alignment:
| Q |
1 |
tcgttggtggttccaggagcataatccaatagcacgtacttatcatcattgatgaaaatgtaagcttcattgtgcctagatgaacgaaatgcagccctta |
100 |
Q |
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| T |
37575 |
tcgttgctggttccgggagcataatccaaaaccaagagctt---atcattgatgaaaaagtatgcttcatttttcctagatgaacgaaatacagcattta |
37671 |
T |
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| Q |
101 |
tgtaaccagattttgtcatctt |
122 |
Q |
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| T |
37672 |
tgtaaccagatttcgtcatctt |
37693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 14452387 - 14452310
Alignment:
| Q |
45 |
atcattgatgaaaatgtaagcttcattgtgcctagatgaacgaaatgcagcccttatgtaaccagattttgtcatctt |
122 |
Q |
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|||||||||||||| ||||||||||||| | |||||||||||| | |||| ||| |||||||||||||||||||| |
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| T |
14452387 |
atcattgatgaaaaagtaagcttcattggacttagatgaacgaattacagcatttacataaccagattttgtcatctt |
14452310 |
T |
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