View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1721_high_41 (Length: 238)
Name: NF1721_high_41
Description: NF1721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1721_high_41 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 44693206 - 44692987
Alignment:
| Q |
19 |
cttttgcacttggccctggtacattctctgaaaatccaatcacactgtctctcaaaccatctacaatggcttgacgttgacgagcaatacccatcccaga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44693206 |
cttttgcacttggccctggtacattctctgaaaatccaatcacactgtctctcaaaccatctacaatggcttgacgttgacgagcaatacccatcccaga |
44693107 |
T |
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| Q |
119 |
gagatatttagactcagcctcaccctcggctcgctttatttgcaagattttctctgcttcagccttctcattagctgcgatcctcattcttgcagctaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44693106 |
gagatatttagactcagcctcaccctcggctcgctttatttgcaagattttctctgcttcagccttctcattagctgcgatcctcattcttgcagctaat |
44693007 |
T |
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| Q |
219 |
catagacaggaaacggtaaa |
238 |
Q |
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|||||||||||||||||||| |
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| T |
44693006 |
catagacaggaaacggtaaa |
44692987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 44683474 - 44683273
Alignment:
| Q |
19 |
cttttgcacttggccctggtacattctctgaaaatccaatcacactgtctctcaaaccatctacaatggcttgacgttgacgagcaatacccatcccaga |
118 |
Q |
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|||||||| | | |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||| |||||| |
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| T |
44683474 |
cttttgcagtcgtccctggtacattaactgaaaatccaatcacactgtctctcaaaccatccacaatggcttgacgctggcgagcaatacccaacccaga |
44683375 |
T |
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| Q |
119 |
gagatatttagactcagcctcaccctcggctcgctttatttgcaagattttctctgcttcagccttctcattagctgcgatcctcattcttgcagctaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||| || |
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| T |
44683374 |
gagatatttagactcagcctcaccctcggctcgcttaatttgcaagattttctctgcttcagccttctctttagctgccaacctcattcttgcagctgat |
44683275 |
T |
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| Q |
219 |
ca |
220 |
Q |
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|| |
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| T |
44683274 |
ca |
44683273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 44654675 - 44654474
Alignment:
| Q |
19 |
cttttgcacttggccctggtacattctctgaaaatccaatcacactgtctctcaaaccatctacaatggcttgacgttgacgagcaatacccatcccaga |
118 |
Q |
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|||||||| | | |||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||| |||||| |
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| T |
44654675 |
cttttgcagtcgtccctggtacattaactgaaaatccaatcacactgtctctcaaaccatccacaatcgcttgacgctggcgagcaatacccaacccaga |
44654576 |
T |
|
| Q |
119 |
gagatatttagactcagcctcaccctcggctcgctttatttgcaagattttctctgcttcagccttctcattagctgcgatcctcattcttgcagctaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||| || |
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| T |
44654575 |
gagatatttagactcagcctcaccctcggctcgcttaatttgcaagattttctctgcttcagccttctctttagctgccaacctcattcttgcagctgat |
44654476 |
T |
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| Q |
219 |
ca |
220 |
Q |
| |
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|| |
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| T |
44654475 |
ca |
44654474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 44632809 - 44632613
Alignment:
| Q |
19 |
cttttgcacttggccctggtacattctctgaaaatccaatcacactgtctctcaaaccatctacaatggcttgacgttgacgagcaatacccatcccaga |
118 |
Q |
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|||||||||||| |||||||||||| | || ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
44632809 |
cttttgcacttgtccctggtacattaaccgagaatccaatcacactgtctctcaaaccatccacaatggcttgacgttggcgagcaatacccatcccaga |
44632710 |
T |
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| Q |
119 |
gagatatttagactcagcctcaccctcggctcgctttatttgcaagattttctctgcttcagccttctcattagctgcgatcctcattcttgcagct |
215 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || || ||||| |||||||| | |||||||||||||||| |
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| T |
44632709 |
gagatatttggactcagcctcaccctcggctcgctttatttgcaagatcttctctgcctccgctttctccttagctgctaacctcattcttgcagct |
44632613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 44636033 - 44636229
Alignment:
| Q |
19 |
cttttgcacttggccctggtacattctctgaaaatccaatcacactgtctctcaaaccatctacaatggcttgacgttgacgagcaatacccatcccaga |
118 |
Q |
| |
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|||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
44636033 |
ctttagcacttgtccctggtacattaactgaaaatccaatcacactgtctctcaaaccatccacaatggcttgacgttgacgagcaatacccaccccatg |
44636132 |
T |
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| Q |
119 |
gagatatttagactcagcctcaccctcggctcgctttatttgcaagattttctctgcttcagccttctcattagctgcgatcctcattcttgcagct |
215 |
Q |
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|||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||| || ||||| || |||||||| | ||||||||||||||| |
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| T |
44636133 |
gagatatttagattcagcctcaccctcggctcgctttacttgcaagatcttctctgcctctgccttttctttagctgccactctcattcttgcagct |
44636229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 44625520 - 44625430
Alignment:
| Q |
19 |
cttttgcacttggccctggtacattctctgaaaatccaatcacactgtctctcaaaccatctacaatggcttgacgttgacgagcaatacc |
109 |
Q |
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|||||||| | | |||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||| |
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| T |
44625520 |
cttttgcagtcgtccctggtacattaactgaaaatccaatcacactgtctctcaaaccatccacaatcgcttgacgctggcgagcaatacc |
44625430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 39 - 215
Target Start/End: Complemental strand, 3205185 - 3205009
Alignment:
| Q |
39 |
acattctctgaaaatccaatcacactgtctctcaaaccatctacaatggcttgacgttgacgagcaatacccatcccagagagatatttagactcagcct |
138 |
Q |
| |
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||||||||||| ||| ||| ||| |||||||||| || || ||||| ||||||||||| ||||| ||||| | || || |||||||| |||||||| | |
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| T |
3205185 |
acattctctgagaatgcaagcacgctgtctctcagtccgtcaacaattgcttgacgttggcgagctataccgagtcctgacagatatttggactcagctt |
3205086 |
T |
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| Q |
139 |
caccctcggctcgctttatttgcaagattttctctgcttcagccttctcattagctgcgatcctcattcttgcagct |
215 |
Q |
| |
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| || || ||| ||| || ||||| || || ||||||||||||||||| || || || | |||||||||||||||| |
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| T |
3205085 |
ctccttcagctttcttgatctgcaatatcttttctgcttcagccttctcgttcgcagccaacctcattcttgcagct |
3205009 |
T |
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