View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1721_high_45 (Length: 236)
Name: NF1721_high_45
Description: NF1721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1721_high_45 |
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Alignment Details
Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 104 - 219
Target Start/End: Original strand, 276746 - 276861
Alignment:
| Q |
104 |
aggattgcagtgtcagaaagttgattagttgaaatcttaggaaagtgagagtgcaagattaaaagtttagatgtaactaattccatttaagagaaatgaa |
203 |
Q |
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| T |
276746 |
aggattgcagtgtcagaaagttgattagttgaaatcttaggaaagtgtgagtgcaagattaaaagtttagatgtaattaattccatataagagaaatgaa |
276845 |
T |
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| Q |
204 |
ttggttatagtttaac |
219 |
Q |
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| T |
276846 |
ttggttatagtttaac |
276861 |
T |
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Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 276608 - 276702
Alignment:
| Q |
1 |
ttcaagatgtcgtcatatgcgaataaatatgagatgtgggaccaggccaccctttttcaagaaaagcatctaacccaattatcttattcttaatg |
95 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
276608 |
ttcaagatgtcgtcatatgtgaataaatatgagatgtgggaccaggccaccctttttcaagaaaagcatctaacccaattgtcttatttttaatg |
276702 |
T |
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