View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1721_high_48 (Length: 230)
Name: NF1721_high_48
Description: NF1721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1721_high_48 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 33095743 - 33095525
Alignment:
| Q |
1 |
tttaaacatagtactttcaatcaaccaaaacaaattgagtattttaaattacgaaaatattctaaaacaaaatgatatctagtcactccacatttaggaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33095743 |
tttaaacatagtactttcaatcaaccaaaacaaattgagtattttaaattacaaaaatattctaaaacaaaatgatatctagtcactccacatttaagaa |
33095644 |
T |
|
| Q |
101 |
atcagcctctaagccaaactcgtttaaagacacgtcaacaacatcaagaaatccactgtcatacaaactcgtctcc---aacatcccacattttagtttt |
197 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33095643 |
atcagcctctatgccaaactcgtctaaagacacgtcaacaacatcaagaaatccacggtcatacaaactcgtctccaacaacatcccacattttagtttt |
33095544 |
T |
|
| Q |
198 |
ctcttaatgatgttggatt |
216 |
Q |
| |
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||||||||||||||||||| |
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| T |
33095543 |
ctcttaatgatgttggatt |
33095525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 79 - 196
Target Start/End: Original strand, 9648504 - 9648624
Alignment:
| Q |
79 |
ctagtcactccacatttaggaaatcagcctctaagccaaactcgtttaaagacacgtcaacaacatcaagaaatccactgtcatacaaactcgtctcca- |
177 |
Q |
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| T |
9648504 |
ctagtcactctacattgagaaaatcagcctctaagcgtagctcatgtaaagacaagtcagcaacatcaagaaatccactatcatccaaactcatctccag |
9648603 |
T |
|
| Q |
178 |
--acatcccacattttagttt |
196 |
Q |
| |
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| ||||||||||||||||| |
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|
| T |
9648604 |
cgatatcccacattttagttt |
9648624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 9650815 - 9650735
Alignment:
| Q |
82 |
gtcactccacatttaggaaatcagcctctaagccaaactcgtttaaagacacgtcaacaacatcaagaaatccactgtcat |
162 |
Q |
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||||||||||||| || |||||||||||||| || | || | |||||||| |||||||| |||||||||||||| |||| |
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|
| T |
9650815 |
gtcactccacattgagaaaatcagcctctaaacctagctaatctaaagacaaatcaacaacttcaagaaatccactatcat |
9650735 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 23930698 - 23930642
Alignment:
| Q |
22 |
caaccaaaacaaattgagtattttaaattacg-aaaatattctaaaacaaaatgata |
77 |
Q |
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|
| T |
23930698 |
caaccaaaacaaattgagtactttcaattacgaaaaatattttaaaacaaaatgata |
23930642 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 40698483 - 40698302
Alignment:
| Q |
19 |
aatcaaccaaaacaaattgagtattttaaattacgaaaa-tattctaaaacaaaatgatat---------ctagtcactccacatttaggaaatcagcct |
108 |
Q |
| |
|
|||| ||||||||||| |||||| ||| |||||| |||| |||| ||||||||||||||| |||||||||||||||| || |||||||||| |
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| T |
40698483 |
aatcgaccaaaacaaactgagtactttgaattacaaaaaatattttaaaacaaaatgataaaatcatatcctagtcactccacattgagaaaatcagcct |
40698384 |
T |
|
| Q |
109 |
ctaagccaaactcgtttaaagacacgtcaacaacatcaagaaatccactgtcatacaaactcgtctccaac---atcccacattttagttt |
196 |
Q |
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||||||| | ||| | |||||||| | |||||||||||||| |||| ||||||| |||||||| ||||||||||||||||| |
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|
| T |
40698383 |
ctaagcctagctcatctaaagacaag---------tcaagaaatccactatcatccaaactcatctccaacgatatcccacattttagttt |
40698302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 162
Target Start/End: Original strand, 40697291 - 40697373
Alignment:
| Q |
79 |
ctagtcactccacatttaggaaatcagcctctaagccaaactcgtttaaagacacgtcaacaacatcaagaaatccactgtcat |
162 |
Q |
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|||||||||||||||| || ||||||||||||||||| | ||| | |||| ||| |||| |||| ||| |||||||||| |||| |
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| T |
40697291 |
ctagtcactccacattgagaaaatcagcctctaagcctagctcatctaaa-acaagtcagcaacttcaggaaatccactatcat |
40697373 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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