View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1721_high_51 (Length: 225)
Name: NF1721_high_51
Description: NF1721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1721_high_51 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 47447672 - 47447888
Alignment:
| Q |
1 |
catcgttattgaactcacaggttttcaagtccctgccacaacaaacattgttccaatgtaagtaccaatcaaatatatagtacacaatacacattagtaa |
100 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47447672 |
catcgttagtgaactcacaagttttcaagtccctgccacaacaaacattgttccaatgtaagtaccaatcaaatatatagtacacaatacacattagtaa |
47447771 |
T |
|
| Q |
101 |
tggaattaacaattctctcctatacctttataaatgcaacagattcatccatttgcatttgtctttcaccaaatttctccttctaccttcataattgtac |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47447772 |
tggaattaacaattctcacctatacctttataaatgcaacagattcatccatttgcatttgtctttcaccaaatttctccttctaccttcataattgtac |
47447871 |
T |
|
| Q |
201 |
aaaatttcttctctgct |
217 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
47447872 |
aaaatttcttttctgct |
47447888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University