View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1721_high_57 (Length: 203)
Name: NF1721_high_57
Description: NF1721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1721_high_57 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 5e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 45201206 - 45201035
Alignment:
| Q |
15 |
atcacagaaaaaagaactgccctggttgctgacatgaagagaaggaaactaggtgaagagtagccaagtgtttcaacaaagctaaaggccaaaaacataa |
114 |
Q |
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|||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
45201206 |
atcacagaaaaaagaattgccccggtcgctgacatgaagaggaggaaactaggtgaagagtagccaagtgtttcaacaaagctgaaagccaaaaacataa |
45201107 |
T |
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| Q |
115 |
gacagaaagaagttgcattcgctgagataatcaagaaacagttgcagatataggtgtgaaagagttgcttgt |
186 |
Q |
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||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| |||||| |
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| T |
45201106 |
tacaaaaagaagttgcatttgctgagataattaagaaacagttgcagatataggtatgaaagagtggcttgt |
45201035 |
T |
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Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 7772899 - 7773069
Alignment:
| Q |
15 |
atcacagaaaaaagaactgccctggttgctgacatgaagagaaggaaactaggtgaagagtagccaagtgtttcaacaaagctaaaggccaaaaacataa |
114 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||| | ||||||||||||| | |
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| T |
7772899 |
atcacagcaaaaagaactgccctggttgctgacatgaagaggaggaacctaggtgaagagtag-caagtgtttcaacaaagttgaaggccaaaaacacca |
7772997 |
T |
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| Q |
115 |
gacagaaagaagttgcattcgctgagataatcaagaaacagttgcagatataggtgtgaaagagttgcttgt |
186 |
Q |
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||| |||||||||| |||||||||||||||| | |||| ||||||||||||| ||||||||| |||||| |
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| T |
7772998 |
tacaaaaagaagttgaattcgctgagataatccatttacagatgcagatataggtatgaaagagtggcttgt |
7773069 |
T |
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