View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1721_high_9 (Length: 446)
Name: NF1721_high_9
Description: NF1721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1721_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 16 - 434
Target Start/End: Complemental strand, 23755279 - 23754857
Alignment:
| Q |
16 |
caaaacgaagggaaaatgacgactcctgcaa-ttgaatctgacatcaaagtttccctattcttgtgaaaatattgaaaagcaaatatatgactcaacagt |
114 |
Q |
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|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23755279 |
caaaacaaagggaaaatgacgactcctgcaaattgaatctgacatcaaagtttccctattcttgtgaaaatattgaaaagcaaatatatgactcaacagg |
23755180 |
T |
|
| Q |
115 |
tcaggtacatttttgactaaccataattcacttctagaattttcacctcaagtcatactattactaattagcactcataaattttcaaatggtgggtctg |
214 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
23755179 |
tcaggtacacttttgactaaccataattcacttctagaattttcacctcaagtcatactattactaattatcattcataaattttcaaatggtgggtctg |
23755080 |
T |
|
| Q |
215 |
nnnnnnn---cttataattgttatgattgtggggttgcatttcatcgtcatatcgttttctctgatgatcatatgtatatttcattattttcttctcacc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23755079 |
ttttttttttcttataattgttatgattgtggggttgcatttcatcgtcatatcgttttctctgatgatcatatgtatatttcattattttcttctcacc |
23754980 |
T |
|
| Q |
312 |
cactgaatgcaaggattgggatggcaacaaaactgaaacctactcactctggctcatgttaaatctcacatcaaatgcgatgtgatgatatttacttgag |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
23754979 |
cactgaatgcaaggattgggatggcaacaaaactgaaacctactcactctgtctcatgttaaatctcacatcaaatgtgatgtgattgtatttacttgag |
23754880 |
T |
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| Q |
412 |
atgagataaaggaatagtatttt |
434 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
23754879 |
atgagataaaggaatagtatttt |
23754857 |
T |
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